ID FOXP4_HUMAN Reviewed; 680 AA. AC Q8IVH2; Q5W098; Q7Z7F8; Q8IW55; Q96E19; DT 13-APR-2004, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2003, sequence version 1. DT 24-JAN-2024, entry version 178. DE RecName: Full=Forkhead box protein P4; DE AltName: Full=Fork head-related protein-like A; GN Name=FOXP4; Synonyms=FKHLA; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RA Daigo Y., Takayama I., Fujino M.A.; RT "Isolation, mapping, and characterization of a novel human cDNA RT differentially expressed in the fundus of W/Wv mutant mice."; RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=14574404; DOI=10.1038/nature02055; RA Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., RA Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., RA Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., RA Andrews T.D., Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., RA Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., RA Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., RA Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., RA Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., RA Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., RA Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., RA Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., RA French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., RA Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., RA Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., RA Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., RA Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., RA Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., RA Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., RA Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., RA Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., RA Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., RA Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., RA Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., RA Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., RA Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., RA Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., RA Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., RA West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., RA Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., RA Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., RA Rogers J., Beck S.; RT "The DNA sequence and analysis of human chromosome 6."; RL Nature 425:805-811(2003). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). RC TISSUE=Lung, and Skin; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18669648; DOI=10.1073/pnas.0805139105; RA Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., RA Elledge S.J., Gygi S.P.; RT "A quantitative atlas of mitotic phosphorylation."; RL Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). RN [6] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=20068231; DOI=10.1126/scisignal.2000475; RA Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., RA Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.; RT "Quantitative phosphoproteomics reveals widespread full phosphorylation RT site occupancy during mitosis."; RL Sci. Signal. 3:RA3-RA3(2010). RN [7] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=22814378; DOI=10.1073/pnas.1210303109; RA Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A., RA Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E., Timmerman E., RA Prieto J., Arnesen T., Sherman F., Gevaert K., Aldabe R.; RT "N-terminal acetylome analyses and functional insights of the N-terminal RT acetyltransferase NatB."; RL Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012). RN [8] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-52; SER-86 AND SER-554, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [9] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Liver; RX PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014; RA Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., RA Ye M., Zou H.; RT "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver RT phosphoproteome."; RL J. Proteomics 96:253-262(2014). RN [10] RP SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-246, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=25218447; DOI=10.1038/nsmb.2890; RA Hendriks I.A., D'Souza R.C., Yang B., Verlaan-de Vries M., Mann M., RA Vertegaal A.C.; RT "Uncovering global SUMOylation signaling networks in a site-specific RT manner."; RL Nat. Struct. Mol. Biol. 21:927-936(2014). RN [11] RP SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-175; LYS-246 AND LYS-378, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=28112733; DOI=10.1038/nsmb.3366; RA Hendriks I.A., Lyon D., Young C., Jensen L.J., Vertegaal A.C., RA Nielsen M.L.; RT "Site-specific mapping of the human SUMO proteome reveals co-modification RT with phosphorylation."; RL Nat. Struct. Mol. Biol. 24:325-336(2017). RN [12] RP VARIANT [LARGE SCALE ANALYSIS] THR-464. RX PubMed=16959974; DOI=10.1126/science.1133427; RA Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., RA Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., RA Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V., RA Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., RA Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., RA Velculescu V.E.; RT "The consensus coding sequences of human breast and colorectal cancers."; RL Science 314:268-274(2006). CC -!- FUNCTION: Transcriptional repressor that represses lung-specific CC expression. {ECO:0000250}. CC -!- SUBUNIT: Forms homodimers and heterodimers with FOXP1 and FOXP2. CC Dimerization is required for DNA-binding (By similarity). CC {ECO:0000250}. CC -!- INTERACTION: CC Q8IVH2; Q9H334: FOXP1; NbExp=6; IntAct=EBI-1054619, EBI-983809; CC Q8IVH2; O15409: FOXP2; NbExp=6; IntAct=EBI-1054619, EBI-983612; CC Q8IVH2-2; Q92993: KAT5; NbExp=3; IntAct=EBI-25885364, EBI-399080; CC Q8IVH2-2; Q8TAP4-4: LMO3; NbExp=3; IntAct=EBI-25885364, EBI-11742507; CC Q8IVH2-2; P17252: PRKCA; NbExp=3; IntAct=EBI-25885364, EBI-1383528; CC Q8IVH2-2; Q15047-2: SETDB1; NbExp=3; IntAct=EBI-25885364, EBI-9090795; CC Q8IVH2-2; P61981: YWHAG; NbExp=3; IntAct=EBI-25885364, EBI-359832; CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00089}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; CC IsoId=Q8IVH2-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8IVH2-2; Sequence=VSP_043034; CC Name=3; CC IsoId=Q8IVH2-3; Sequence=VSP_043465, VSP_043466; CC -!- DOMAIN: The leucine-zipper is required for dimerization and CC transcriptional repression. {ECO:0000250}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB080747; BAC53809.1; -; mRNA. DR EMBL; AL139331; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471081; EAX04047.1; -; Genomic_DNA. DR EMBL; CH471081; EAX04048.1; -; Genomic_DNA. DR EMBL; CH471081; EAX04049.1; -; Genomic_DNA. DR EMBL; BC013030; AAH13030.2; -; mRNA. DR EMBL; BC040962; AAH40962.1; -; mRNA. DR EMBL; BC052803; AAH52803.1; -; mRNA. DR CCDS; CCDS34447.1; -. [Q8IVH2-1] DR CCDS; CCDS34448.1; -. [Q8IVH2-2] DR CCDS; CCDS4856.1; -. [Q8IVH2-3] DR RefSeq; NP_001012426.1; NM_001012426.1. [Q8IVH2-1] DR RefSeq; NP_001012427.1; NM_001012427.1. [Q8IVH2-2] DR RefSeq; NP_612466.1; NM_138457.2. [Q8IVH2-3] DR PDB; 6XAT; X-ray; 2.20 A; A=464-550. DR PDBsum; 6XAT; -. DR AlphaFoldDB; Q8IVH2; -. DR SMR; Q8IVH2; -. DR BioGRID; 125474; 68. DR DIP; DIP-59301N; -. DR IntAct; Q8IVH2; 57. DR MINT; Q8IVH2; -. DR STRING; 9606.ENSP00000362151; -. DR GlyGen; Q8IVH2; 4 sites, 1 O-linked glycan (4 sites). DR iPTMnet; Q8IVH2; -. DR PhosphoSitePlus; Q8IVH2; -. DR BioMuta; FOXP4; -. DR DMDM; 46395887; -. DR EPD; Q8IVH2; -. DR jPOST; Q8IVH2; -. DR MassIVE; Q8IVH2; -. DR MaxQB; Q8IVH2; -. DR PaxDb; 9606-ENSP00000362151; -. DR PeptideAtlas; Q8IVH2; -. DR ProteomicsDB; 70705; -. [Q8IVH2-1] DR ProteomicsDB; 70706; -. [Q8IVH2-2] DR ProteomicsDB; 70707; -. [Q8IVH2-3] DR Pumba; Q8IVH2; -. DR ABCD; Q8IVH2; 2 sequenced antibodies. DR Antibodypedia; 1453; 300 antibodies from 35 providers. DR DNASU; 116113; -. DR Ensembl; ENST00000307972.10; ENSP00000309823.4; ENSG00000137166.18. [Q8IVH2-1] DR Ensembl; ENST00000373057.7; ENSP00000362148.3; ENSG00000137166.18. [Q8IVH2-2] DR Ensembl; ENST00000373063.7; ENSP00000362154.3; ENSG00000137166.18. [Q8IVH2-3] DR Ensembl; ENST00000704756.1; ENSP00000516024.1; ENSG00000137166.18. [Q8IVH2-1] DR GeneID; 116113; -. DR KEGG; hsa:116113; -. DR MANE-Select; ENST00000307972.10; ENSP00000309823.4; NM_001012426.2; NP_001012426.1. DR UCSC; uc003oql.4; human. [Q8IVH2-1] DR AGR; HGNC:20842; -. DR CTD; 116113; -. DR DisGeNET; 116113; -. DR GeneCards; FOXP4; -. DR HGNC; HGNC:20842; FOXP4. DR HPA; ENSG00000137166; Low tissue specificity. DR MalaCards; FOXP4; -. DR MIM; 608924; gene. DR neXtProt; NX_Q8IVH2; -. DR OpenTargets; ENSG00000137166; -. DR PharmGKB; PA134943098; -. DR VEuPathDB; HostDB:ENSG00000137166; -. DR eggNOG; KOG4385; Eukaryota. DR GeneTree; ENSGT00940000158700; -. DR HOGENOM; CLU_019502_3_1_1; -. DR InParanoid; Q8IVH2; -. DR OMA; KQQPKEX; -. DR OrthoDB; 5385885at2759; -. DR PhylomeDB; Q8IVH2; -. DR TreeFam; TF326978; -. DR PathwayCommons; Q8IVH2; -. DR SignaLink; Q8IVH2; -. DR BioGRID-ORCS; 116113; 24 hits in 1181 CRISPR screens. DR ChiTaRS; FOXP4; human. DR GeneWiki; FOXP4; -. DR GenomeRNAi; 116113; -. DR Pharos; Q8IVH2; Tbio. DR PRO; PR:Q8IVH2; -. DR Proteomes; UP000005640; Chromosome 6. DR RNAct; Q8IVH2; Protein. DR Bgee; ENSG00000137166; Expressed in kidney epithelium and 166 other cell types or tissues. DR ExpressionAtlas; Q8IVH2; baseline and differential. DR GO; GO:0000785; C:chromatin; ISA:NTNU_SB. DR GO; GO:0005634; C:nucleus; IBA:GO_Central. DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; ISA:NTNU_SB. DR GO; GO:0001227; F:DNA-binding transcription repressor activity, RNA polymerase II-specific; IBA:GO_Central. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central. DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central. DR CDD; cd20067; FH_FOXP4; 1. DR Gene3D; 1.20.5.340; -; 1. DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1. DR InterPro; IPR047414; FH_FOXP4. DR InterPro; IPR001766; Fork_head_dom. DR InterPro; IPR032354; FOXP-CC. DR InterPro; IPR030456; TF_fork_head_CS_2. DR InterPro; IPR036388; WH-like_DNA-bd_sf. DR InterPro; IPR036390; WH_DNA-bd_sf. DR PANTHER; PTHR45796; FORKHEAD BOX P, ISOFORM C; 1. DR PANTHER; PTHR45796:SF7; FORKHEAD BOX PROTEIN P4; 1. DR Pfam; PF00250; Forkhead; 1. DR Pfam; PF16159; FOXP-CC; 1. DR PRINTS; PR00053; FORKHEAD. DR SMART; SM00339; FH; 1. DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1. DR PROSITE; PS00658; FORK_HEAD_2; 1. DR PROSITE; PS50039; FORK_HEAD_3; 1. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. DR Genevisible; Q8IVH2; HS. PE 1: Evidence at protein level; KW 3D-structure; Alternative splicing; DNA-binding; Isopeptide bond; KW Metal-binding; Nucleus; Phosphoprotein; Reference proteome; Repressor; KW Transcription; Transcription regulation; Ubl conjugation; Zinc; KW Zinc-finger. FT CHAIN 1..680 FT /note="Forkhead box protein P4" FT /id="PRO_0000091889" FT ZN_FING 307..332 FT /note="C2H2-type" FT DNA_BIND 467..559 FT /note="Fork-head" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00089" FT REGION 1..56 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 262..306 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 349..370 FT /note="Leucine-zipper" FT REGION 407..445 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 602..680 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 274..288 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 52 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 86 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 554 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT CROSSLNK 175 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT CROSSLNK 246 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:25218447, FT ECO:0007744|PubMed:28112733" FT CROSSLNK 378 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0007744|PubMed:28112733" FT VAR_SEQ 141..142 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_043034" FT VAR_SEQ 220 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_043465" FT VAR_SEQ 384..395 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_043466" FT VARIANT 464 FT /note="A -> T (in a breast cancer sample; somatic mutation; FT dbSNP:rs867245225)" FT /evidence="ECO:0000269|PubMed:16959974" FT /id="VAR_036219" FT HELIX 472..482 FT /evidence="ECO:0007829|PDB:6XAT" FT HELIX 490..500 FT /evidence="ECO:0007829|PDB:6XAT" FT HELIX 502..506 FT /evidence="ECO:0007829|PDB:6XAT" FT HELIX 509..521 FT /evidence="ECO:0007829|PDB:6XAT" FT STRAND 525..528 FT /evidence="ECO:0007829|PDB:6XAT" FT STRAND 535..538 FT /evidence="ECO:0007829|PDB:6XAT" SQ SEQUENCE 680 AA; 73488 MW; A63826ED85B24752 CRC64; MMVESASETI RSAPSGQNGV GSLSGQADGS SGGATGTTAS GTGREVTTGA DSNGEMSPAE LLHFQQQQAL QVARQFLLQQ ASGLSSPGNN DSKQSASAVQ VPVSVAMMSP QMLTPQQMQQ ILSPPQLQAL LQQQQALMLQ QLQEYYKKQQ EQLHLQLLTQ QQAGKPQPKE ALGNKQLAFQ QQLLQMQQLQ QQHLLNLQRQ GLVSLQPNQA SGPLQTLPQA AVCPTDLPQL WKGEGAPGQP AEDSVKQEGL DLTGTAATAT SFAAPPKVSP PLSHHTLPNG QPTVLTSRRD SSSHEETPGS HPLYGHGECK WPGCETLCED LGQFIKHLNT EHALDDRSTA QCRVQMQVVQ QLEIQLAKES ERLQAMMAHL HMRPSEPKPF SQPLNPVPGS SSFSKVTVSA ADSFPDGLVH PPTSAAAPVT PLRPPGLGSA SLHGGGPARR RSSDKFCSPI SSELAQNHEF YKNADVRPPF TYASLIRQAI LETPDRQLTL NEIYNWFTRM FAYFRRNTAT WKNAVRHNLS LHKCFVRVEN VKGAVWTVDE REYQKRRPPK MTGSPTLVKN MISGLSYGAL NASYQAALAE SSFPLLNSPG MLNPGSASSL LPLSHDDVGA PVEPLPSNGS SSPPRLSPPQ YSHQVQVKEE PAEAEEDRQP GPPLGAPNPS ASGPPEDRDL EEELPGEELS //