Q8IVF4 (DYH10_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 82.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Dynein heavy chain 10, axonemal Alternative name(s): Axonemal beta dynein heavy chain 10 Ciliary dynein heavy chain 10 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 4471 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly By similarity. Probable inner arm dynein heavy chain. |
| Subunit structure | Consists of at least two heavy chains and a number of intermediate and light chains. |
| Subcellular location | Cytoplasm › cytoskeleton › cilium axoneme Potential. |
| Tissue specificity | Expressed primarily in trachea and testis, 2 tissues containing axonemal structures. Also expressed in brain but not in adult heart. |
| Domain | Dynein heavy chains probably consist of an N-terminal stem (which binds cargo and interacts with other dynein components), and the head or motor domain. The motor contains six tandemly-linked AAA domains in the head, which form a ring. A stalk-like structure (formed by two of the coiled coil domains) protrudes between AAA 4 and AAA 5 and terminates in a microtubule-binding site. A seventh domain may also contribute to this ring; it is not clear whether the N-terminus or the C-terminus forms this extra domain. There are four well-conserved and two non-conserved ATPase sites, one per AAA domain. Probably only one of these (within AAA 1) actually hydrolyzes ATP, the others may serve a regulatory function By similarity. |
| Sequence similarities | Belongs to the dynein heavy chain family. Contains 5 TPR repeats. |
| Sequence caution | The sequence BAC04579.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAC86296.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cell projection Cilium Cytoplasm Cytoskeleton Dynein Microtubule |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Coiled coil Repeat TPR repeat |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Motor protein |
| PTM | Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | ATP catabolic process Inferred from electronic annotation. Source: GOC microtubule-based movementInferred from electronic annotation. Source: InterPro |
| Cellular_component | cilium axoneme Inferred from electronic annotation. Source: UniProtKB-SubCell dynein complexInferred from electronic annotation. Source: UniProtKB-KW microtubuleInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular_function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATPase activityInferred from electronic annotation. Source: InterPro microtubule motor activityInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q8IVF4-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 2 (identifier: Q8IVF4-2) The sequence of this isoform differs from the canonical sequence as follows: 1090-1095: HLAKNL → VLNRCV 1096-4471: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 4471 | 4471 | Dynein heavy chain 10, axonemal | PRO_0000318938 | |||||
Regions | |||||||||
| Repeat | 1221 – 1254 | 34 | TPR 1 | ||||||
| Repeat | 2736 – 2769 | 34 | TPR 2 | ||||||
| Repeat | 2771 – 2797 | 27 | TPR 3 | ||||||
| Repeat | 3802 – 3837 | 36 | TPR 4 | ||||||
| Repeat | 4074 – 4108 | 35 | TPR 5 | ||||||
| Nucleotide binding | 1832 – 1839 | 8 | ATP Potential | ||||||
| Nucleotide binding | 2113 – 2120 | 8 | ATP Potential | ||||||
| Nucleotide binding | 2455 – 2462 | 8 | ATP Potential | ||||||
| Nucleotide binding | 2803 – 2810 | 8 | ATP Potential | ||||||
| Region | 1 – 1793 | 1793 | Stem By similarity | ||||||
| Region | 1794 – 2015 | 222 | AAA 1 By similarity | ||||||
| Region | 2075 – 2294 | 220 | AAA 2 By similarity | ||||||
| Region | 2417 – 2665 | 249 | AAA 3 By similarity | ||||||
| Region | 2765 – 3014 | 250 | AAA 4 By similarity | ||||||
| Region | 3029 – 3313 | 285 | Stalk By similarity | ||||||
| Region | 3399 – 3629 | 231 | AAA 5 By similarity | ||||||
| Region | 3845 – 4062 | 218 | AAA 6 By similarity | ||||||
| Coiled coil | 203 – 223 | 21 | Potential | ||||||
| Coiled coil | 602 – 622 | 21 | Potential | ||||||
| Coiled coil | 1071 – 1106 | 36 | Potential | ||||||
| Coiled coil | 1217 – 1245 | 29 | Potential | ||||||
| Coiled coil | 2747 – 2770 | 24 | Potential | ||||||
| Coiled coil | 3045 – 3131 | 87 | Potential | ||||||
| Coiled coil | 3257 – 3327 | 71 | Potential | ||||||
| Coiled coil | 3567 – 3638 | 72 | Potential | ||||||
| Coiled coil | 4235 – 4260 | 26 | Potential | ||||||
| Motif | 1832 – 1839 | 8 | GPAGTGKT motif | ||||||
| Motif | 1882 – 1888 | 7 | CFDEFNR motif | ||||||
| Compositional bias | 18 – 25 | 8 | Poly-Glu | ||||||
| Compositional bias | 949 – 952 | 4 | Poly-Glu | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 1074 | 1 | N-linked (GlcNAc...) Ref.5 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1090 – 1095 | 6 | HLAKNL → VLNRCV in isoform 2. | VSP_033518 | |||||
| Alternative sequence | 1096 – 4471 | 3376 | Missing in isoform 2. | VSP_033519 | |||||
| Natural variant | 167 | 1 | S → P. Corresponds to variant rs11057353 [ dbSNP | Ensembl ]. | VAR_060135 | |||||
| Natural variant | 480 | 1 | I → V. Ref.2 Corresponds to variant rs10846559 [ dbSNP | Ensembl ]. | VAR_038916 | |||||
| Natural variant | 1724 | 1 | T → M. Corresponds to variant rs34934281 [ dbSNP | Ensembl ]. | VAR_060136 | |||||
| Natural variant | 1767 | 1 | D → E. Corresponds to variant rs7969937 [ dbSNP | Ensembl ]. | VAR_060137 | |||||
| Natural variant | 1865 | 1 | R → K. Corresponds to variant rs35685787 [ dbSNP | Ensembl ]. | VAR_060138 | |||||
| Natural variant | 1986 | 1 | T → M. Corresponds to variant rs33935373 [ dbSNP | Ensembl ]. | VAR_062177 | |||||
| Natural variant | 2403 | 1 | R → W. Corresponds to variant rs7977449 [ dbSNP | Ensembl ]. | VAR_060139 | |||||
| Natural variant | 2483 | 1 | N → S. Corresponds to variant rs11835416 [ dbSNP | Ensembl ]. | VAR_060140 | |||||
Experimental info | |||||||||
| Sequence conflict | 1631 | 1 | L → V in BAC86296. Ref.2 | ||||||
| Sequence conflict | 1631 | 1 | L → V in BAC23113. Ref.3 | ||||||
| Sequence conflict | 2046 | 1 | F → L in BAC86296. Ref.2 | ||||||
| Sequence conflict | 2132 – 2134 | 3 | KLG → NLS in BAC86296. Ref.2 | ||||||
Sequences
| ||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "The finished DNA sequence of human chromosome 12." Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R. Gibbs R.A.Nature 440:346-351(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 155-4471 (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1487-2134 AND 2926-3760 (ISOFORM 1), VARIANT VAL-480. Tissue: Brain and Testis. |
| [3] | "The nucleotide sequence of a long cDNA clone isolated from human." Nagase T., Kikuno R., Ohara O. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1421-4471 (ISOFORM 1). Tissue: Brain. |
| [4] | "Identification, tissue specific expression, and chromosomal localisation of several human dynein heavy chain genes." Maiti A.K., Mattei M.-G., Jorissen M., Volz A., Zeigler A., Bouvagnet P. Eur. J. Hum. Genet. 8:923-932(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1836-1936 (ISOFORM 1). Tissue: Nasal polyp. |
| [5] | "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry." Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H. J. Proteome Res. 8:651-661(2009) [PubMed] [Europe PMC] [Abstract] Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-1074, MASS SPECTROMETRY. Tissue: Liver. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC079315 Genomic DNA. No translation available. AC117503 Genomic DNA. No translation available. AK095581 mRNA. Translation: BAC04579.1. Different initiation. AK125475 mRNA. Translation: BAC86173.1. AK125796 mRNA. Translation: BAC86296.1. Different initiation. AB095937 mRNA. Translation: BAC23113.2. AJ132089 mRNA. Translation: CAA10562.1. |
| IPI | IPI00401809. IPI00784869. |
| RefSeq | NP_997320.2. NM_207437.3. |
| UniGene | Hs.622654. |
3D structure databases | |
| ProteinModelPortal | Q8IVF4. |
| SMR | Q8IVF4. Positions 3124-3261, 3894-4102. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000386770. |
PTM databases | |
| PhosphoSite | Q8IVF4. |
Polymorphism databases | |
| DMDM | 296439473. |
Proteomic databases | |
| PaxDb | Q8IVF4. |
| PRIDE | Q8IVF4. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000409039; ENSP00000386770; ENSG00000197653. |
| GeneID | 196385. |
| KEGG | hsa:196385. |
| UCSC | uc001uft.4. human. uc010taw.1. human. |
Organism-specific databases | |
| CTD | 196385. |
| GeneCards | GC12P124247. |
| H-InvDB | HIX0022875. |
| HGNC | HGNC:2941. DNAH10. |
| HPA | HPA039066. |
| MIM | 605884. gene. |
| neXtProt | NX_Q8IVF4. |
| PharmGKB | PA27395. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG5245. |
| HOGENOM | HOG000237308. |
| HOVERGEN | HBG107827. |
| InParanoid | Q8IVF4. |
| OMA | KEEWSQT. |
| OrthoDB | EOG4FFD0W. |
Gene expression databases | |
| ArrayExpress | Q8IVF4. |
| Bgee | Q8IVF4. |
| CleanEx | HS_DNAH10. |
| Genevestigator | Q8IVF4. |
Family and domain databases | |
| InterPro | IPR003593. AAA+_ATPase. IPR011704. ATPase_dyneun-rel_AAA. IPR026983. DHC_fam. IPR024743. Dynein_HC_stalk. IPR024317. Dynein_heavy_chain_D4_dom. IPR004273. Dynein_heavy_dom. IPR013594. Dynein_heavy_dom-1. IPR013602. Dynein_heavy_dom-2. [Graphical view] |
| PANTHER | PTHR10676. PTHR10676. 1 hit. |
| Pfam | PF07728. AAA_5. 1 hit. PF12780. AAA_8. 1 hit. PF08385. DHC_N1. 2 hits. PF08393. DHC_N2. 1 hit. PF03028. Dynein_heavy. 1 hit. PF12777. MT. 1 hit. [Graphical view] |
| SMART | SM00382. AAA. 3 hits. [Graphical view] |
| PROSITE | PS50005. TPR. False negative. PS50293. TPR_REGION. False negative. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | DNAH10. human. |
| GenomeRNAi | 196385. |
| NextBio | 89451. |
| SOURCE | Search... |
Entry information
| Entry name | DYH10_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8IVF4 Secondary accession number(s): C9JMF5 Q8N761 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 12 Human chromosome 12: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
