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Protein

Coiled-coil domain-containing protein 71

Gene

CCDC71

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Coiled-coil domain-containing protein 71
Gene namesi
Name:CCDC71
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 3

Organism-specific databases

HGNCiHGNC:25760. CCDC71.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA143485422.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 467467Coiled-coil domain-containing protein 71PRO_0000234421Add
BLAST

Proteomic databases

MaxQBiQ8IV32.
PaxDbiQ8IV32.
PRIDEiQ8IV32.

PTM databases

PhosphoSiteiQ8IV32.

Expressioni

Gene expression databases

BgeeiQ8IV32.
CleanExiHS_CCDC71.
GenevestigatoriQ8IV32.

Organism-specific databases

HPAiHPA047547.

Interactioni

Protein-protein interaction databases

BioGridi122347. 5 interactions.
STRINGi9606.ENSP00000319006.

Structurei

3D structure databases

ProteinModelPortaliQ8IV32.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili279 – 35981Sequence AnalysisAdd
BLAST

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiNOG45674.
GeneTreeiENSGT00700000104576.
HOGENOMiHOG000111433.
HOVERGENiHBG061228.
InParanoidiQ8IV32.
OMAiSPVIRLQ.
OrthoDBiEOG7B05DF.
PhylomeDBiQ8IV32.
TreeFamiTF336191.

Family and domain databases

InterProiIPR026695. Ccdc71/71L.
[Graphical view]
PANTHERiPTHR14484. PTHR14484. 1 hit.
PfamiPF15374. CCDC71L. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8IV32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVVVQHVEE KAVHSWSRIS TAGKKALEEA LLVFNPMSQD LSATEAQLVA
60 70 80 90 100
FLQGLRDDGF QPTILRSGDV YGYSSCTANP PSQTKLQARA PNPTATSPPA
110 120 130 140 150
SAPRTAMRLP AGRATLLPMP LSGRLAKAST PALAKHATTN LLLSSLKQSS
160 170 180 190 200
ASHARGAAVG FPTHLYPGVY PAMRLSVVLE ALVPLKTPMP CLGAKHKAQS
210 220 230 240 250
LQLSLADSPL KLRKSSGKGP GNPRPKAPRK TTSKGPKCLT RKGPGAGPRR
260 270 280 290 300
GSGHQSKTNR ATGSPSVRRM KGGSALGTKT AQAKVARTLA KAARAQAKVA
310 320 330 340 350
RTQAKAAKAR AKAKAAQVKA KAKAKAAQVK AKAKVMAAWA KAKAKAKAVR
360 370 380 390 400
AKAKVARTQP RGRGRPKGSA KARTTRKGQK NRPETVGQKR KRAEEAKDLP
410 420 430 440 450
PKKRTRLGPR SPKAWLGPGT AKLLKFRAIK VDRRSSDDEV RQRAQRILRV
460
NLSPVIRLQP LLPYSAV
Length:467
Mass (Da):49,648
Last modified:January 11, 2011 - v3
Checksum:i287B1BF4CF30B1A1
GO

Sequence cautioni

The sequence BAB14642.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti317 – 3171Q → L.2 Publications
Corresponds to variant rs4955419 [ dbSNP | Ensembl ].
VAR_026236
Natural varianti339 – 3391W → R.2 Publications
Corresponds to variant rs4955418 [ dbSNP | Ensembl ].
VAR_026237

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK022862 mRNA. Translation: BAB14278.1.
AK023691 mRNA. Translation: BAB14642.1. Different initiation.
AC135506 Genomic DNA. No translation available.
BC035516 mRNA. Translation: AAH35516.1.
BC071960 mRNA. Translation: AAH71960.1.
CCDSiCCDS2790.1.
RefSeqiNP_075054.3. NM_022903.3.
UniGeneiHs.211472.

Genome annotation databases

EnsembliENST00000321895; ENSP00000319006; ENSG00000177352.
GeneIDi64925.
KEGGihsa:64925.
UCSCiuc003cwg.4. human.

Polymorphism databases

DMDMi317373459.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK022862 mRNA. Translation: BAB14278.1.
AK023691 mRNA. Translation: BAB14642.1. Different initiation.
AC135506 Genomic DNA. No translation available.
BC035516 mRNA. Translation: AAH35516.1.
BC071960 mRNA. Translation: AAH71960.1.
CCDSiCCDS2790.1.
RefSeqiNP_075054.3. NM_022903.3.
UniGeneiHs.211472.

3D structure databases

ProteinModelPortaliQ8IV32.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi122347. 5 interactions.
STRINGi9606.ENSP00000319006.

PTM databases

PhosphoSiteiQ8IV32.

Polymorphism databases

DMDMi317373459.

Proteomic databases

MaxQBiQ8IV32.
PaxDbiQ8IV32.
PRIDEiQ8IV32.

Protocols and materials databases

DNASUi64925.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000321895; ENSP00000319006; ENSG00000177352.
GeneIDi64925.
KEGGihsa:64925.
UCSCiuc003cwg.4. human.

Organism-specific databases

CTDi64925.
GeneCardsiGC03M049199.
HGNCiHGNC:25760. CCDC71.
HPAiHPA047547.
neXtProtiNX_Q8IV32.
PharmGKBiPA143485422.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG45674.
GeneTreeiENSGT00700000104576.
HOGENOMiHOG000111433.
HOVERGENiHBG061228.
InParanoidiQ8IV32.
OMAiSPVIRLQ.
OrthoDBiEOG7B05DF.
PhylomeDBiQ8IV32.
TreeFamiTF336191.

Miscellaneous databases

ChiTaRSiCCDC71. human.
GenomeRNAii64925.
NextBioi67077.
PROiQ8IV32.

Gene expression databases

BgeeiQ8IV32.
CleanExiHS_CCDC71.
GenevestigatoriQ8IV32.

Family and domain databases

InterProiIPR026695. Ccdc71/71L.
[Graphical view]
PANTHERiPTHR14484. PTHR14484. 1 hit.
PfamiPF15374. CCDC71L. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS LEU-317 AND ARG-339.
    Tissue: Placenta.
  2. "The DNA sequence, annotation and analysis of human chromosome 3."
    Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J.
    , Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R., Lozado R.J., Metzker M.L., Milosavljevic A., Miner G.R., Morgan M.B., Nazareth L.V., Scott G., Sodergren E., Song X.-Z., Steffen D., Wei S., Wheeler D.A., Wright M.W., Worley K.C., Yuan Y., Zhang Z., Adams C.Q., Ansari-Lari M.A., Ayele M., Brown M.J., Chen G., Chen Z., Clendenning J., Clerc-Blankenburg K.P., Chen R., Chen Z., Davis C., Delgado O., Dinh H.H., Dong W., Draper H., Ernst S., Fu G., Gonzalez-Garay M.L., Garcia D.K., Gillett W., Gu J., Hao B., Haugen E., Havlak P., He X., Hennig S., Hu S., Huang W., Jackson L.R., Jacob L.S., Kelly S.H., Kube M., Levy R., Li Z., Liu B., Liu J., Liu W., Lu J., Maheshwari M., Nguyen B.-V., Okwuonu G.O., Palmeiri A., Pasternak S., Perez L.M., Phelps K.A., Plopper F.J., Qiang B., Raymond C., Rodriguez R., Saenphimmachak C., Santibanez J., Shen H., Shen Y., Subramanian S., Tabor P.E., Verduzco D., Waldron L., Wang J., Wang J., Wang Q., Williams G.A., Wong G.K.-S., Yao Z., Zhang J., Zhang X., Zhao G., Zhou J., Zhou Y., Nelson D., Lehrach H., Reinhardt R., Naylor S.L., Yang H., Olson M., Weinstock G., Gibbs R.A.
    Nature 440:1194-1198(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS LEU-317 AND ARG-339.
    Tissue: Ovary and Pancreas.

Entry informationi

Entry nameiCCD71_HUMAN
AccessioniPrimary (citable) accession number: Q8IV32
Secondary accession number(s): Q6IPE2, Q9H8H4, Q9H9F1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: January 11, 2011
Last modified: January 7, 2015
This is version 85 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 3
    Human chromosome 3: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.