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Protein

Laccase domain-containing protein 1

Gene

LACC1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Laccase domain-containing protein 1
Gene namesi
Name:LACC1
Synonyms:C13orf31
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 13

Organism-specific databases

HGNCiHGNC:26789. LACC1.

Pathology & Biotechi

Involvement in diseasei

Rheumatoid arthritis systemic juvenile (RASJ)1 Publication
The gene represented in this entry may be involved in disease pathogenesis.
Disease descriptionAn inflammatory articular disorder with systemic-onset beginning before the age of 16. It represents a subgroup of juvenile arthritis associated with severe extraarticular features and occasionally fatal complications. During active phases of the disorder, patients display a typical daily spiking fever, an evanescent macular rash, lymphadenopathy, hepatosplenomegaly, serositis, myalgia and arthritis.
See also OMIM:604302
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti284 – 2841C → R in RASJ; unknown pathological significance. 1 Publication
VAR_073274

Organism-specific databases

MIMi604302. phenotype.
PharmGKBiPA147358522.

Polymorphism and mutation databases

BioMutaiLACC1.
DMDMi32171848.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 430430Laccase domain-containing protein 1PRO_0000163187Add
BLAST

Proteomic databases

EPDiQ8IV20.
MaxQBiQ8IV20.
PaxDbiQ8IV20.
PRIDEiQ8IV20.

PTM databases

iPTMnetiQ8IV20.
PhosphoSiteiQ8IV20.

Expressioni

Gene expression databases

BgeeiQ8IV20.
CleanExiHS_C13orf31.
ExpressionAtlasiQ8IV20. baseline and differential.
GenevisibleiQ8IV20. HS.

Organism-specific databases

HPAiCAB034228.
HPA040150.
HPA044211.

Interactioni

Protein-protein interaction databases

BioGridi126879. 37 interactions.
STRINGi9606.ENSP00000317619.

Structurei

3D structure databases

ProteinModelPortaliQ8IV20.
SMRiQ8IV20. Positions 191-430.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the LACC1 family.Curated

Phylogenomic databases

eggNOGiENOG410IHUK. Eukaryota.
COG1496. LUCA.
GeneTreeiENSGT00390000000693.
HOGENOMiHOG000230933.
HOVERGENiHBG040925.
InParanoidiQ8IV20.
KOiK05810.
OMAiPYVDIRK.
PhylomeDBiQ8IV20.
TreeFamiTF328389.

Family and domain databases

Gene3Di3.60.140.10. 1 hit.
InterProiIPR003730. Cu_polyphenol_OxRdtase_Laccase.
IPR011324. Cytotoxic_necrot_fac-like_cat.
[Graphical view]
PfamiPF02578. Cu-oxidase_4. 1 hit.
[Graphical view]
SUPFAMiSSF64438. SSF64438. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8IV20-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEAVLIDLF GLKLNSQKNC HQTLLKTLNA VQYHHAAKAK FLCIMCCSNI
60 70 80 90 100
SYERDGEQDN CEIETSNGLS ALLEEFEIVS CPSMAATLYT IKQKIDEKNL
110 120 130 140 150
SSIKVIVPRH RKTLMKAFID QLFTDVYNFE FEDLQVTFRG GLFKQSIEIN
160 170 180 190 200
VITAQELRGI QNEIETFLRS LPALRGKLTI ITSSLIPDIF IHGFTTRTGG
210 220 230 240 250
ISYIPTLSSF NLFSSSKRRD PKVVVQENLR RLANAAGFNV EKFYRIKTHH
260 270 280 290 300
SNDIWIMGRK EPDSYDGITT NQRGVTIAAL GADCIPIVFA DPVKKACGVA
310 320 330 340 350
HAGWKGTLLG VAMATVNAMI AEYGCSLEDI VVVLGPSVGP CCFTLPRESA
360 370 380 390 400
EAFHNLHPAC VQLFDSPNPC IDIRKATRIL LEQGGILPQN IQDQNQDLNL
410 420 430
CTSCHPDKFF SHVRDGLNFG TQIGFISIKE
Length:430
Mass (Da):47,780
Last modified:March 1, 2003 - v1
Checksum:i369324C4B4A685A4
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti254 – 2541I → V.1 Publication
Corresponds to variant rs3764147 [ dbSNP | Ensembl ].
VAR_052943
Natural varianti284 – 2841C → R in RASJ; unknown pathological significance. 1 Publication
VAR_073274

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK096044 mRNA. Translation: BAC04686.1.
AL512506 Genomic DNA. Translation: CAM22539.1.
CH471075 Genomic DNA. Translation: EAX08701.1.
BC035749 mRNA. Translation: AAH35749.1.
CCDSiCCDS9391.1.
RefSeqiNP_001121775.1. NM_001128303.1.
NP_694950.2. NM_153218.2.
XP_005266318.1. XM_005266261.2.
XP_006719829.1. XM_006719766.2.
XP_011533235.1. XM_011534933.1.
XP_011533236.1. XM_011534934.1.
UniGeneiHs.210586.

Genome annotation databases

EnsembliENST00000325686; ENSP00000317619; ENSG00000179630.
ENST00000441843; ENSP00000391747; ENSG00000179630.
GeneIDi144811.
KEGGihsa:144811.
UCSCiuc001uzf.4. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK096044 mRNA. Translation: BAC04686.1.
AL512506 Genomic DNA. Translation: CAM22539.1.
CH471075 Genomic DNA. Translation: EAX08701.1.
BC035749 mRNA. Translation: AAH35749.1.
CCDSiCCDS9391.1.
RefSeqiNP_001121775.1. NM_001128303.1.
NP_694950.2. NM_153218.2.
XP_005266318.1. XM_005266261.2.
XP_006719829.1. XM_006719766.2.
XP_011533235.1. XM_011534933.1.
XP_011533236.1. XM_011534934.1.
UniGeneiHs.210586.

3D structure databases

ProteinModelPortaliQ8IV20.
SMRiQ8IV20. Positions 191-430.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi126879. 37 interactions.
STRINGi9606.ENSP00000317619.

PTM databases

iPTMnetiQ8IV20.
PhosphoSiteiQ8IV20.

Polymorphism and mutation databases

BioMutaiLACC1.
DMDMi32171848.

Proteomic databases

EPDiQ8IV20.
MaxQBiQ8IV20.
PaxDbiQ8IV20.
PRIDEiQ8IV20.

Protocols and materials databases

DNASUi144811.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000325686; ENSP00000317619; ENSG00000179630.
ENST00000441843; ENSP00000391747; ENSG00000179630.
GeneIDi144811.
KEGGihsa:144811.
UCSCiuc001uzf.4. human.

Organism-specific databases

CTDi144811.
GeneCardsiLACC1.
HGNCiHGNC:26789. LACC1.
HPAiCAB034228.
HPA040150.
HPA044211.
MIMi604302. phenotype.
613409. gene.
neXtProtiNX_Q8IV20.
PharmGKBiPA147358522.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IHUK. Eukaryota.
COG1496. LUCA.
GeneTreeiENSGT00390000000693.
HOGENOMiHOG000230933.
HOVERGENiHBG040925.
InParanoidiQ8IV20.
KOiK05810.
OMAiPYVDIRK.
PhylomeDBiQ8IV20.
TreeFamiTF328389.

Miscellaneous databases

GenomeRNAii144811.
PROiQ8IV20.
SOURCEiSearch...

Gene expression databases

BgeeiQ8IV20.
CleanExiHS_C13orf31.
ExpressionAtlasiQ8IV20. baseline and differential.
GenevisibleiQ8IV20. HS.

Family and domain databases

Gene3Di3.60.140.10. 1 hit.
InterProiIPR003730. Cu_polyphenol_OxRdtase_Laccase.
IPR011324. Cytotoxic_necrot_fac-like_cat.
[Graphical view]
PfamiPF02578. Cu-oxidase_4. 1 hit.
[Graphical view]
SUPFAMiSSF64438. SSF64438. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT VAL-254.
    Tissue: Kidney.
  2. "The DNA sequence and analysis of human chromosome 13."
    Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., Frankish A.G., Frankland J., French L., Garner P., Garnett J., Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., Rogers J., Ross M.T.
    Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Pancreas.
  5. "Association of a mutation in LACC1 with a monogenic form of systemic juvenile idiopathic arthritis."
    Wakil S.M., Monies D.M., Abouelhoda M., Al-Tassan N., Al-Dusery H., Naim E.A., Al-Younes B., Shinwari J., Al-Mohanna F.A., Meyer B.F., Al-Mayouf S.
    Arthritis Rheum. 67:288-295(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: INVOLVEMENT IN RASJ, VARIANT RASJ ARG-284.

Entry informationi

Entry nameiLACC1_HUMAN
AccessioniPrimary (citable) accession number: Q8IV20
Secondary accession number(s): A2A3Z6, Q8N8X5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2003
Last sequence update: March 1, 2003
Last modified: June 8, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 13
    Human chromosome 13: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families
  6. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.