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Q8IR69 (Q8IR69_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 94. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1181 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
Q8IR69 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: AD451B406E8719B1

FASTA1,181126,044
        10         20         30         40         50         60 
MELEHKLQLE HKYQFAVNSH GAFQELRNES MVTAAAAAVA QEQHRQQLHQ QQQQHQQQQQ 

        70         80         90        100        110        120 
QQQHQQQQQQ QQARGRDGMK LKQNCSANAS PEVKQILNCF ILSRKSQAAA SNGTTTTSPY 

       130        140        150        160        170        180 
RNRGVVKSSS GESLPAGTVT SAHPYKIPQP PPSLLKYESD FPLRKTASEP NLLKIRLKQS 

       190        200        210        220        230        240 
VIERKARIGG PAGARRHERL LQAAQRRQQK NSVLTNCNST PDSGPNSPPS AAALAVGVVG 

       250        260        270        280        290        300 
SRGSPTSAPI QEENEEGSQY QPGQRSSIND LPLFSSPSLP NISLGRPHLP NSAQAHAQVN 

       310        320        330        340        350        360 
AQVAAQAQAQ AQAQAQAHAM FAALAAAQGG CGQPGYYNPL GMAFVGRQPA PLAMIPATGI 

       370        380        390        400        410        420 
APQQPSPVVR SASATSTSSS QASLVGDVAP PQAHAASTIL PSSSSYMQQL GSVAGSGVNL 

       430        440        450        460        470        480 
HAAAVAAAAA AAAAAGSLPP TNSHGHGHGS HAHPHPHAHG HGHGHGHGIY AGHQHNVPIT 

       490        500        510        520        530        540 
DAQVAQVHLH KQGHRPLGRT QSAPLPLGHP MLTGAVQLNV VQTHYENSEA ERQAYEHQVV 

       550        560        570        580        590        600 
NQKVRQTVLT RSGAAAAAAA AAGVSVVREA QLKEEDDDSA AEVMDLTDKK KPPKTVLTST 

       610        620        630        640        650        660 
IATSTSQNLP EALAAAAAAA AYRAPHNASS NSASATKSGI KLRDQEYLQQ QREQLLLLQQ 

       670        680        690        700        710        720 
EEELAKSLMR PLSRTLSSPL VPLGPHGLSQ IPDTGQQPAP IATSSSADHI PPVNLSLPHR 

       730        740        750        760        770        780 
QHRQLMSTLY ASQLRNHQPS ASGSPPHKVT TGLAYDPLML KHSCICGDNA QHPEHSGRLQ 

       790        800        810        820        830        840 
SVWARLNETD LVKRCDRLRA RKATQEELQT VHTEAHAMLF GSNQCQLSRP KLENTLSASF 

       850        860        870        880        890        900 
VRLSCGGLGV DLDTTWNEHH TATAARMAAG CVIDLALKTA KGDLRNGFAV VRPPGHHAEA 

       910        920        930        940        950        960 
NLAMGFCFFN SIAIAAKLLR QRMPEVRRIL IVDWDVHHGN GTQQAFYQSP DILYLSIHRH 

       970        980        990       1000       1010       1020 
DDGNFFPGTG GPTECGSGAG LGFNVNISWS GALNPPLGDA EYIAAFRTVV MPIARSFNPD 

      1030       1040       1050       1060       1070       1080 
IVLVSSGFDA ATGHPAPLGG YHVSPACFGF MTRELLQLAN GKVVLALEGG YDLAAICDSA 

      1090       1100       1110       1120       1130       1140 
QECVRALLGD PAAPIAKAEL ERPPCQNAIN TLQKTIAIQQ THWPCVRMLE HTVGLSALET 

      1150       1160       1170       1180 
LKVEHDESET INAMAGLSMQ SMHRTLSRDD SEEPMDQDET K 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[3]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: Berkeley.
[4]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[5]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[6]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[7]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[8]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[9]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[10]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[11]FlyBase
Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014298 Genomic DNA. Translation: AAN09318.1.
AE014298 Genomic DNA. Translation: AGB95350.1.
RefSeqNP_001259508.1. NM_001272579.1.
NP_727682.1. NM_167356.3.
UniGeneDm.6484.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0073798; FBpp0073629; FBgn0041210.
FBtr0333332; FBpp0305524; FBgn0041210.
GeneID32278.
KEGGdme:Dmel_CG1770.
UCSCCG1770-RB. d. melanogaster.

Organism-specific databases

CTD9759.
FlyBaseFBgn0041210. HDAC4.

Phylogenomic databases

GeneTreeENSGT00530000062809.
InParanoidQ8IR69.
KOK11406.

Gene expression databases

BgeeQ8IR69.

Family and domain databases

Gene3D3.40.800.20. 1 hit.
InterProIPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
IPR017320. Histone_deAcase_II_euk.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFPIRSF037911. HDAC_II_euk. 1 hit.
PRINTSPR01270. HDASUPER.
ProtoNetSearch...

Other

GenomeRNAi32278.
NextBio777716.

Entry information

Entry nameQ8IR69_DROME
AccessionPrimary (citable) accession number: Q8IR69
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: June 11, 2014
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)