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Q8IPB2 (Q8IPB2_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 67. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.3.2.25 EMBL AAN10770.2

CG16833, isoform G EMBL AAN10771.2
EC=6.3.2.25 EMBL AAN10771.2

CG16833, isoform H EMBL ACZ94234.1
EC=6.3.2.25 EMBL ACZ94234.1
Gene names
ORF Names:CG16833 FlyBase FBgn0026147, Dmel_CG16833 EMBL AAN10770.2
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length1071 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AAN10770.2
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processprotein modification process

Inferred from electronic annotation. Source: InterPro

   Molecular functiontubulin-tyrosine ligase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q8IPB2 [UniParc].

Last modified November 30, 2010. Version 2.
Checksum: 6EB2488C290FA57F

FASTA1,071123,050
        10         20         30         40         50         60 
MRNNSGYHIP ASNSLNNNGA PASRYCNADN TFCYYSYDNC NLIAPAWGNR QNQNQNSVPN 

        70         80         90        100        110        120 
QNHNLPTKRI PTKQSARSSY HQSAANSAPD SSLFTDAFGQ QSLVNQRIAG NKSCEYVYQT 

       130        140        150        160        170        180 
VQRSEDQHSN RQYKQARSYA VDKEQQQQML LQPSIVYFDA ELKKRKDRGG RVSNDYVDNS 

       190        200        210        220        230        240 
PDRYRPLNSP SPEPTWDNIL SERPVQYQTT NQHYQHYFSY FYNRGAEKLS KPTFAAANSR 

       250        260        270        280        290        300 
KVPMSKFQKA GASRRDSREV DGTVIIGRRD NSEDRTWQGQ KYEKHVLKEK LPSNDLKADY 

       310        320        330        340        350        360 
LDNGWGGDPG SEDDYRDIKD SYDPVVVIDN GLEQVGVHRR YCRMTENTVL DGSGDTLINN 

       370        380        390        400        410        420 
NNNELKIMRK STDQPMPRLP MTPKRAKGGT VSTKKPMPTV HRVLLYSTQS PRLGRKQQFS 

       430        440        450        460        470        480 
TQRLSVKQQS SKVLGAGDER QTVLLLEPEH KQEDHRSAID FDRNDDFDED DDLDNLSNFD 

       490        500        510        520        530        540 
ESDTASVLSD TEDGYRAHAF KLTHSVDRFS SPQSTPSFLS SQSSEDDLKN PDSLLVPSLF 

       550        560        570        580        590        600 
PYVPPYLSFS SNTKRGPRVP PDLHRVLKWR ITNIMPKVVR LILANSGMRM LKKTNDWMGV 

       610        620        630        640        650        660 
WGKHLKSPCF KAIRSYQKIN HLPGSFRIGR KDSCWKNLQR QMGKHSNKEF GFMPRTYIIP 

       670        680        690        700        710        720 
NDLGALRRHW PKYAQRNTKW IIKPPASARG AGIRVINRWG QIPKRRPLIV QKYIERPLLI 

       730        740        750        760        770        780 
NGSKFDLRLY VLVTSVNPLR VFMYHNGLAR FASVKYSAKT DTLNDRCMHL TNYSINKFSS 

       790        800        810        820        830        840 
NYSKNEDVNA CHGHKWTIKS LWTYLANRGV RTDCLWEALR SLVLRTILAG ENGINSMIRA 

       850        860        870        880        890        900 
NVESKYSCFE LFGFDVILDS DLVPWLLEVN ISPSLHSELP LDAHVKAPLV QGVLNTALYN 

       910        920        930        940        950        960 
VPPKLSLDKQ KELAAEFSFP PGTQMCYDKR LYINYLSREE KIKHNTFTRK SMEDRNEYVD 

       970        980        990       1000       1010       1020 
AILNNLTPDD VRCLIIAEDE LARCAPLERI FPTDQTHKYL KYNDTPRYYN RLLDAWESRY 

      1030       1040       1050       1060       1070 
ANNRTEGIAL LRDYCQNKYH LQVPTPPAKK DSNDEETTPA TPNTVKEEIE S 

« Hide

References

« Hide 'large scale' references
[1]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed: 17569856] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed: 17569867] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[4]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed: 16110336] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[6]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085.1-RESEARCH0085.16(2002) [PubMed: 12537574] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[7]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.W., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed: 12537573] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3 (12), RESEARCH0079 (2002)
Cited for: NUCLEOTIDE SEQUENCE.
[9]Drosophila Heterochromatin Genome Project
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]FlyBase
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[11]Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Karpen G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[12]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[13]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014134 Genomic DNA. Translation: AAN10770.2.
AE014134 Genomic DNA. Translation: AAN10771.2.
AE014134 Genomic DNA. Translation: ACZ94234.1.
RefSeqNP_001162947.1. NM_001169476.1.
NP_723642.2. NM_164953.2.
NP_723643.2. NM_164954.2.
UniGeneDm.7119.

3D structure databases

ProteinModelPortalQ8IPB2.
ModBaseSearch...

Protein-protein interaction databases

MINTMINT-839524.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0300400; FBpp0289629; FBgn0026147.
FBtr0300403; FBpp0289632; FBgn0026147.
FBtr0300404; FBpp0289633; FBgn0026147.
GeneID47729.
KEGGdme:Dmel_CG16833.
UCSCCG16833-RD. d. melanogaster.

Organism-specific databases

FlyBaseFBgn0026147. CG16833.

Phylogenomic databases

PhylomeDBQ8IPB2.

Gene expression databases

BgeeQ8IPB2.

Family and domain databases

InterProIPR004344. Tub_tyr_ligase.
[Graphical view]
PANTHERPTHR12241. Tub_tyr_ligase. 1 hit.
PfamPF03133. TTL. 1 hit.
[Graphical view]
PROSITEPS51221. TTL. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ8IPB2_DROME
AccessionPrimary (citable) accession number: Q8IPB2
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: November 30, 2010
Last modified: January 25, 2012
This is version 67 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)