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Protein
Submitted name:

TIA-1/TIAL RNA binding protein homolog

Gene

tiar-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
TIA-1/TIAL RNA binding protein homologImported
Gene namesi
Name:tiar-1Imported
ORF Names:C18A3.5Imported, CELE_C18A3.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiC18A3.5f; CE32131; WBGene00015943; tiar-1.

PTM / Processingi

Proteomic databases

PaxDbiQ8IG49.
PeptideAtlasiQ8IG49.

Expressioni

Gene expression databases

BgeeiWBGene00015943.
ExpressionAtlasiQ8IG49. baseline.

Interactioni

Protein-protein interaction databases

STRINGi6239.C18A3.5a.

Structurei

3D structure databases

ProteinModelPortaliQ8IG49.
SMRiQ8IG49.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini22 – 100RRM (RNA recognition motif)InterPro annotationAdd BLAST79
Domaini128 – 199RRM (RNA recognition motif)InterPro annotationAdd BLAST72

Phylogenomic databases

eggNOGiKOG0148. Eukaryota.
ENOG410XQ8U. LUCA.
GeneTreeiENSGT00870000136413.
HOGENOMiHOG000206748.

Family and domain databases

InterProiView protein in InterPro
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
PfamiView protein in Pfam
PF00076. RRM_1. 2 hits.
SMARTiView protein in SMART
SM00360. RRM. 2 hits.
SM00361. RRM_1. 2 hits.
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiView protein in PROSITE
PS50102. RRM. 2 hits.

Sequencei

Sequence statusi: Complete.

Q8IG49-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVNWAVEPG QQQSKIDTTR HFHVFVGDLS SEVDNQKLRE AFQPFGDVSD
60 70 80 90 100
AKVIRDTNTT KSKGYGFVSY PKREEAERAI EQMNGQWLGR RTIRTNWATR
110 120 130 140 150
KPGDQEKPSH YNEKSYDEIY NQTSGDNTSV YVGNIASLTE DEIRQGFASF
160 170 180 190 200
GRITEVRIFK MQGYAFVKFD NKDAAAKAIV QMNNQDVGGQ LVRCSWGKTG
210 220 230 240 250
DTGKTPGGSY GYGYGNSSSG GNSQPYSGYG GGGAYGGGQG GGGHGGPGQQ
260 270 280 290
QSNANSQYWQ YYAQYYNNPQ LMQQWSNYWQ QQGGAPQQQN SGGHQ
Length:295
Mass (Da):32,598
Last modified:March 1, 2003 - v1
Checksum:i288713C9C67429E8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD65019.1.
RefSeqiNP_871980.1. NM_182180.6.
UniGeneiCel.17432.

Genome annotation databases

EnsemblMetazoaiC18A3.5f; C18A3.5f; WBGene00015943.
GeneIDi173967.
UCSCiC18A3.5f.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD65019.1.
RefSeqiNP_871980.1. NM_182180.6.
UniGeneiCel.17432.

3D structure databases

ProteinModelPortaliQ8IG49.
SMRiQ8IG49.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C18A3.5a.

Proteomic databases

PaxDbiQ8IG49.
PeptideAtlasiQ8IG49.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC18A3.5f; C18A3.5f; WBGene00015943.
GeneIDi173967.
UCSCiC18A3.5f.1. c. elegans.

Organism-specific databases

CTDi173967.
WormBaseiC18A3.5f; CE32131; WBGene00015943; tiar-1.

Phylogenomic databases

eggNOGiKOG0148. Eukaryota.
ENOG410XQ8U. LUCA.
GeneTreeiENSGT00870000136413.
HOGENOMiHOG000206748.

Gene expression databases

BgeeiWBGene00015943.
ExpressionAtlasiQ8IG49. baseline.

Family and domain databases

InterProiView protein in InterPro
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
PfamiView protein in Pfam
PF00076. RRM_1. 2 hits.
SMARTiView protein in SMART
SM00360. RRM. 2 hits.
SM00361. RRM_1. 2 hits.
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiView protein in PROSITE
PS50102. RRM. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiQ8IG49_CAEEL
AccessioniPrimary (citable) accession number: Q8IG49
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: June 7, 2017
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.