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Q8H5N0

- Q8H5N0_ORYSJ

UniProt

Q8H5N0 - Q8H5N0_ORYSJ

Protein
Submitted name:

Os07g0450000 protein

Gene

OJ1047_A06.130

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Enzyme and pathway databases

    ReactomeiREACT_208864. SRP-dependent cotranslational protein targeting to membrane.
    REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Os07g0450000 proteinImported
    Submitted name:
    Os07g0523500 proteinImported
    Submitted name:
    Putative 60S ribosomal protein L44Imported
    Submitted name:
    cDNA clone:001-121-E03, full insert sequenceImported
    Submitted name:
    cDNA clone:J033073H17, full insert sequenceImported
    Gene namesi
    Name:OJ1047_A06.130Imported
    Ordered Locus Names:Os07g0450000Imported, Os07g0523500Imported
    OrganismiOryza sativa subsp. japonica (Rice)Imported
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 7

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Protein-protein interaction databases

    STRINGi39947.LOC_Os07g33997.1.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3J61electron microscopy5.50o1-105[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L44e family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1631.
    KOiK02929.
    OMAiKYKMQLA.

    Family and domain databases

    Gene3Di3.10.450.80. 1 hit.
    InterProiIPR000552. Ribosomal_L44e.
    IPR011332. Ribosomal_zn-bd.
    [Graphical view]
    PANTHERiPTHR10369. PTHR10369. 1 hit.
    PfamiPF00935. Ribosomal_L44. 1 hit.
    [Graphical view]
    ProDomiPD002841. Ribosomal_L44e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF57829. SSF57829. 1 hit.
    PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8H5N0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVNVPKTKKT YCKNKECRKH TLHKVTQYKK GKDSLSAQGK RRYDRKQSGY    50
    GGQTKPVFHK KAKTTKKIVL KLQCQSCKHY SQHPIKRCKH FEIGGDKKGK 100
    GTSLF 105
    Length:105
    Mass (Da):12,138
    Last modified:March 1, 2003 - v1
    Checksum:i6587208AC741A901
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003802 Genomic DNA. Translation: BAC15877.1.
    AP008213 Genomic DNA. Translation: BAF21461.1.
    AK063789 mRNA. Translation: BAG88866.1.
    AK121702 mRNA. Translation: BAH00615.1.
    AP008213 Genomic DNA. Translation: BAH93958.1.
    RefSeqiNP_001059547.1. NM_001066082.1.
    NP_001175230.1. NM_001188301.1.
    UniGeneiOs.6267.
    Os.88832.

    Genome annotation databases

    EnsemblPlantsiOS07T0450000-01; OS07T0450000-01; OS07G0450000.
    OS07T0450000-02; OS07T0450000-02; OS07G0450000.
    OS07T0523100-00; OS07T0523100-00; OS07G0523100.
    OS07T0523150-00; OS07T0523150-00; OS07G0523150.
    GeneIDi4343124.
    9266960.
    KEGGiosa:4343124.
    osa:9266960.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003802 Genomic DNA. Translation: BAC15877.1 .
    AP008213 Genomic DNA. Translation: BAF21461.1 .
    AK063789 mRNA. Translation: BAG88866.1 .
    AK121702 mRNA. Translation: BAH00615.1 .
    AP008213 Genomic DNA. Translation: BAH93958.1 .
    RefSeqi NP_001059547.1. NM_001066082.1.
    NP_001175230.1. NM_001188301.1.
    UniGenei Os.6267.
    Os.88832.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3J61 electron microscopy 5.50 o 1-105 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 39947.LOC_Os07g33997.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS07T0450000-01 ; OS07T0450000-01 ; OS07G0450000 .
    OS07T0450000-02 ; OS07T0450000-02 ; OS07G0450000 .
    OS07T0523100-00 ; OS07T0523100-00 ; OS07G0523100 .
    OS07T0523150-00 ; OS07T0523150-00 ; OS07G0523150 .
    GeneIDi 4343124.
    9266960.
    KEGGi osa:4343124.
    osa:9266960.

    Phylogenomic databases

    eggNOGi COG1631.
    KOi K02929.
    OMAi KYKMQLA.

    Enzyme and pathway databases

    Reactomei REACT_208864. SRP-dependent cotranslational protein targeting to membrane.
    REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Family and domain databases

    Gene3Di 3.10.450.80. 1 hit.
    InterProi IPR000552. Ribosomal_L44e.
    IPR011332. Ribosomal_zn-bd.
    [Graphical view ]
    PANTHERi PTHR10369. PTHR10369. 1 hit.
    Pfami PF00935. Ribosomal_L44. 1 hit.
    [Graphical view ]
    ProDomi PD002841. Ribosomal_L44e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF57829. SSF57829. 1 hit.
    PROSITEi PS01172. RIBOSOMAL_L44E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC clone:OJ1047_A06."
      Sasaki T., Matsumoto T., Yamamoto K.
      Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice."
      Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K.
      , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y.
      Science 301:376-379(2003)
      Cited for: NUCLEOTIDE SEQUENCE.
    3. "Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice."
      Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K., Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I.
      , Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y., Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N., Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N., Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M., Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K., Murakami K., Murata M., Nagata T., Nakahama Y., Nakamura M., Namiki T., Narikawa R., Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M., Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K., Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S., Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A., Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y., Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A., Yazaki J., Yokomizo S., Yoshimura A.
      Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NipponbareImported.
    5. "The map-based sequence of the rice genome."
      International Rice Genome Sequencing Project
      Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.
      , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T.
      Nature 436:793-800(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
    6. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7."
      IRGSP(International Rice Genome Sequencing Project)
      Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    7. "The Second Rice Annotation Project Meeting (RAP2)."
      The Rice Annotation Project (RAP)
      Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    8. "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information."
      Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T.
      Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    9. "Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana."
      The Rice Annotation Project (RAP)
      Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E.
      , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.
      Genome Res. 17:175-183(2007)
      Cited for: NUCLEOTIDE SEQUENCE.
    10. "The Rice Annotation Project Database (RAP-DB): 2008 update."
      The Rice Annotation Project (RAP)
      Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H.
      , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M.
      Nucleic Acids Res. 36:D1028-D1033(2008)
      Cited for: NUCLEOTIDE SEQUENCE.
    11. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. NipponbareImported.
    12. "Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion."
      Gogala M., Becker T., Beatrix B., Armache J.P., Barrio-Garcia C., Berninghausen O., Beckmann R.
      Nature 506:107-110(2014) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.50 ANGSTROMS).

    Entry informationi

    Entry nameiQ8H5N0_ORYSJ
    AccessioniPrimary (citable) accession number: Q8H5N0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 1, 2003
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3