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Protein

Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase

Gene

Os07g0688000

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Hydrolyzes ADP-ribose, IDP-ribose, CDP-glycerol, CDP-choline and CDP-ethanolamine, but not other non-reducing ADP-sugars or CDP-glucose.By similarity

Catalytic activityi

CDP-choline + H2O = CMP + phosphocholine.
ADP-D-ribose + H2O = AMP + D-ribose 5-phosphate.
CDP-glycerol + H2O = CMP + sn-glycerol 3-phosphate.

Cofactori

Mg2+By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi25 – 251Zinc 1By similarity
Metal bindingi27 – 271Zinc 1By similarity
Metal bindingi72 – 721Zinc 1By similarity
Metal bindingi72 – 721Zinc 2By similarity
Metal bindingi107 – 1071Zinc 2By similarity
Metal bindingi226 – 2261Zinc 2By similarity
Metal bindingi263 – 2631Zinc 2By similarity
Metal bindingi265 – 2651Zinc 1By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-OSA-2393930. Phosphate bond hydrolysis by NUDT proteins.

Names & Taxonomyi

Protein namesi
Recommended name:
Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase (EC:3.6.1.13, EC:3.6.1.16, EC:3.6.1.53)
Alternative name(s):
ADPRibase-Mn
CDP-choline phosphohydrolase
Gene namesi
Ordered Locus Names:Os07g0688000, LOC_Os07g48840
ORF Names:OJ1150_E04.129, OJ1165_F02.106, OsJ_25650
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 7, cultivar: Nipponbare

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 321321Manganese-dependent ADP-ribose/CDP-alcohol diphosphatasePRO_0000417566Add
BLAST

Proteomic databases

PaxDbiQ8H5F8.
PRIDEiQ8H5F8.

Expressioni

Gene expression databases

GenevisibleiQ8H5F8. OS.

Interactioni

Subunit structurei

Monomer.By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os07g48840.1.

Structurei

3D structure databases

ProteinModelPortaliQ8H5F8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ADPRibase-Mn family.Curated

Phylogenomic databases

eggNOGiENOG410IJ2N. Eukaryota.
COG1409. LUCA.
HOGENOMiHOG000154875.
InParanoidiQ8H5F8.
KOiK01517.
OMAiHECVVCF.

Family and domain databases

Gene3Di3.60.21.10. 1 hit.
InterProiIPR004843. Calcineurin-like_PHP_apaH.
IPR029052. Metallo-depent_PP-like.
[Graphical view]
PfamiPF00149. Metallophos. 1 hit.
[Graphical view]
SUPFAMiSSF56300. SSF56300. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8H5F8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMAVTNGVIH ASSREPLFSF GVIADVQYAD IPDGRSFLGV PRYYRHSISV
60 70 80 90 100
LQRAVSTWNK QHNIKFSINF GDIIDGYCPK DKSLWAVQKV LDEFEKFDGP
110 120 130 140 150
TYHMFGNHCL YNLPRGKLVS LLKMPTDSDR AYYDFSPCPE YRFVVLDAYD
160 170 180 190 200
FSALGWPRDH PVTAEAMKFL EEKNPNSDKN SPDGLVGVDR RFVMFNGGVG
210 220 230 240 250
KEQLSWLNDV LQDASARRQN VILCSHLPMD PGSASFAALM WNYDEVMAIV
260 270 280 290 300
RQYKCVKACF AGHDHKGGHS VDSHGVHHRT LEAALECPPG TSAFGHIEVY
310 320
PDKLLLVGSD KMADTEMCFE P
Length:321
Mass (Da):36,080
Last modified:March 1, 2003 - v1
Checksum:i0CF454F207D34BE0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003813 Genomic DNA. Translation: BAD30300.1.
AP003816 Genomic DNA. Translation: BAC21348.1.
AP008213 Genomic DNA. Translation: BAF22612.1.
AP014963 Genomic DNA. Translation: BAT03310.1.
CM000144 Genomic DNA. Translation: EEE67850.1.
AK069836 mRNA. Translation: BAG91628.1.
AK106965 mRNA. Translation: BAG97898.1.
RefSeqiXP_015647583.1. XM_015792097.1.
UniGeneiOs.31656.

Genome annotation databases

EnsemblPlantsiOS07T0688000-01; OS07T0688000-01; OS07G0688000.
OS07T0688000-02; OS07T0688000-02; OS07G0688000.
GeneIDi4344352.
GrameneiOS07T0688000-01; OS07T0688000-01; OS07G0688000.
OS07T0688000-02; OS07T0688000-02; OS07G0688000.
KEGGiosa:4344352.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003813 Genomic DNA. Translation: BAD30300.1.
AP003816 Genomic DNA. Translation: BAC21348.1.
AP008213 Genomic DNA. Translation: BAF22612.1.
AP014963 Genomic DNA. Translation: BAT03310.1.
CM000144 Genomic DNA. Translation: EEE67850.1.
AK069836 mRNA. Translation: BAG91628.1.
AK106965 mRNA. Translation: BAG97898.1.
RefSeqiXP_015647583.1. XM_015792097.1.
UniGeneiOs.31656.

3D structure databases

ProteinModelPortaliQ8H5F8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os07g48840.1.

Proteomic databases

PaxDbiQ8H5F8.
PRIDEiQ8H5F8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS07T0688000-01; OS07T0688000-01; OS07G0688000.
OS07T0688000-02; OS07T0688000-02; OS07G0688000.
GeneIDi4344352.
GrameneiOS07T0688000-01; OS07T0688000-01; OS07G0688000.
OS07T0688000-02; OS07T0688000-02; OS07G0688000.
KEGGiosa:4344352.

Phylogenomic databases

eggNOGiENOG410IJ2N. Eukaryota.
COG1409. LUCA.
HOGENOMiHOG000154875.
InParanoidiQ8H5F8.
KOiK01517.
OMAiHECVVCF.

Enzyme and pathway databases

ReactomeiR-OSA-2393930. Phosphate bond hydrolysis by NUDT proteins.

Gene expression databases

GenevisibleiQ8H5F8. OS.

Family and domain databases

Gene3Di3.60.21.10. 1 hit.
InterProiIPR004843. Calcineurin-like_PHP_apaH.
IPR029052. Metallo-depent_PP-like.
[Graphical view]
PfamiPF00149. Metallophos. 1 hit.
[Graphical view]
SUPFAMiSSF56300. SSF56300. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiADPRM_ORYSJ
AccessioniPrimary (citable) accession number: Q8H5F8
Secondary accession number(s): A0A0P0XAT7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 13, 2012
Last sequence update: March 1, 2003
Last modified: May 11, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.