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Q8H2J9

- GPDA_ORYSJ

UniProt

Q8H2J9 - GPDA_ORYSJ

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Protein

Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic

Gene

Os07g0229800

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli

Functioni

Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids.By similarity

Catalytic activityi

sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei191 – 1911NADBy similarity
Binding sitei214 – 2141NAD; via amide nitrogenBy similarity
Binding sitei214 – 2141SubstrateBy similarity
Binding sitei248 – 2481NAD; via amide nitrogenBy similarity
Active sitei299 – 2991Proton acceptorBy similarity
Binding sitei363 – 3631NADBy similarity
Binding sitei389 – 3891NADBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi114 – 1196NADBy similarity

GO - Molecular functioni

  1. glycerol-3-phosphate dehydrogenase [NAD+] activity Source: UniProtKB-EC
  2. NAD binding Source: EnsemblPlants/Gramene

GO - Biological processi

  1. anther development Source: EnsemblPlants/Gramene
  2. carbohydrate metabolic process Source: EnsemblPlants/Gramene
  3. glycerol-3-phosphate catabolic process Source: EnsemblPlants/Gramene
  4. glycerolipid biosynthetic process Source: EnsemblPlants/Gramene
  5. glycerophospholipid metabolic process Source: UniProtKB-UniPathway
  6. phospholipid biosynthetic process Source: UniProtKB-KW
  7. systemic acquired resistance Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Lipid biosynthesis, Lipid metabolism, Phospholipid biosynthesis, Phospholipid metabolism

Keywords - Ligandi

NAD

Enzyme and pathway databases

UniPathwayiUPA00940.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic (EC:1.1.1.8)
Gene namesi
Ordered Locus Names:Os07g0229800, LOC_Os07g12640
ORF Names:OSJNBa0016A21.127
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 7

Organism-specific databases

GrameneiQ8H2J9.

Subcellular locationi

Plastidchloroplast By similarity

GO - Cellular componenti

  1. chloroplast envelope Source: EnsemblPlants/Gramene
  2. glycerol-3-phosphate dehydrogenase complex Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4747ChloroplastSequence AnalysisAdd
BLAST
Chaini48 – 440393Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplasticPRO_0000420175Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiQ8H2J9. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os07g12640.1.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni363 – 3642Substrate bindingBy similarity

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

HOGENOMiHOG000246853.
InParanoidiQ8H2J9.

Family and domain databases

Gene3Di1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
HAMAPiMF_00394. NAD_Glyc3P_dehydrog.
InterProiIPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERiPTHR11728. PTHR11728. 1 hit.
PfamiPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view]
PRINTSiPR00077. GPDHDRGNASE.
SUPFAMiSSF48179. SSF48179. 1 hit.
PROSITEiPS00957. NAD_G3PDH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8H2J9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAAAAAATFL PHTPTPRRRL AVAVHSPTRR RLSLVFSGPP DGALSVAAAE
60 70 80 90 100
EKADAGEEAA AAVSAPRGGG GGGGKERRRV VRKAWEKLVR WSRSWRRRNR
110 120 130 140 150
SDVVETTRKV VVLGGGSFGT AMAAQVAAKK ADLEVSMLLR DDLVCRSINH
160 170 180 190 200
SHINCKYLRD HRLPENITAT TSASDALAGA DFCFHAVPVQ FSSSFLEGIS
210 220 230 240 250
THVDPKLPFI SLSKGLELNT LRTMSQIIPQ ALGNPRQPFI VLSGPSFAIE
260 270 280 290 300
LMNKLPTAMV VASKDKKLAA AVQQLLASPN LRISTSNDVT GVEIAGALKN
310 320 330 340 350
VLAIAAGIVE GMHLGNNCMA ALVAQGCSEI RWLATKMGAK PTTLSGLSGS
360 370 380 390 400
GDIMLTCFVN LSRNRNVGLR LGSGEKLDEI MNSMNQVAEG VSTAGAVIAL
410 420 430 440
AQKYHVKMPV LTAVARIIDN ELTPKKAVME LMNLPQVEEV
Length:440
Mass (Da):46,762
Last modified:November 28, 2012 - v3
Checksum:i5A1D054CC6312A30
GO

Sequence cautioni

The sequence BAG89576.1 differs from that shown. Reason: Sequencing errors.
The sequence BAC84439.1 differs from that shown. Reason: Erroneous gene model prediction.
The sequence BAF21142.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP005764 Genomic DNA. Translation: BAC84439.1. Sequence problems.
AP008213 Genomic DNA. Translation: BAF21142.1. Sequence problems.
AK065591 mRNA. Translation: BAG89576.1. Sequence problems.
RefSeqiNP_001059228.1. NM_001065763.1.
UniGeneiOs.18760.

Genome annotation databases

GeneIDi4342770.
KEGGiosa:4342770.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP005764 Genomic DNA. Translation: BAC84439.1 . Sequence problems.
AP008213 Genomic DNA. Translation: BAF21142.1 . Sequence problems.
AK065591 mRNA. Translation: BAG89576.1 . Sequence problems.
RefSeqi NP_001059228.1. NM_001065763.1.
UniGenei Os.18760.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 39947.LOC_Os07g12640.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4342770.
KEGGi osa:4342770.

Organism-specific databases

Gramenei Q8H2J9.

Phylogenomic databases

HOGENOMi HOG000246853.
InParanoidi Q8H2J9.

Enzyme and pathway databases

UniPathwayi UPA00940 .

Gene expression databases

ExpressionAtlasi Q8H2J9. baseline.

Family and domain databases

Gene3Di 1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
HAMAPi MF_00394. NAD_Glyc3P_dehydrog.
InterProi IPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view ]
PANTHERi PTHR11728. PTHR11728. 1 hit.
Pfami PF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view ]
PRINTSi PR00077. GPDHDRGNASE.
SUPFAMi SSF48179. SSF48179. 1 hit.
PROSITEi PS00957. NAD_G3PDH. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiGPDA_ORYSJ
AccessioniPrimary (citable) accession number: Q8H2J9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2012
Last sequence update: November 28, 2012
Last modified: October 29, 2014
This is version 101 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3