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Q8H2J9 (GPDA_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 99. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic

EC=1.1.1.8
Gene names
Ordered Locus Names:Os07g0229800, LOC_Os07g12640
ORF Names:OSJNBa0016A21.127
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length440 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids By similarity. HAMAP-Rule MF_00394

Catalytic activity

sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH. HAMAP-Rule MF_00394

Pathway

Membrane lipid metabolism; glycerophospholipid metabolism. HAMAP-Rule MF_00394

Subcellular location

Plastidchloroplast By similarity HAMAP-Rule MF_00394.

Sequence similarities

Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.

Sequence caution

The sequence BAC84439.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence BAF21142.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence BAG89576.1 differs from that shown. Reason: Sequencing errors.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 4747Chloroplast Potential
Chain48 – 440393Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic HAMAP-Rule MF_00394
PRO_0000420175

Regions

Nucleotide binding114 – 1196NAD By similarity
Region363 – 3642Substrate binding By similarity

Sites

Active site2991Proton acceptor By similarity
Binding site1911NAD By similarity
Binding site2141NAD; via amide nitrogen By similarity
Binding site2141Substrate By similarity
Binding site2481NAD; via amide nitrogen By similarity
Binding site3631NAD By similarity
Binding site3891NAD By similarity

Sequences

Sequence LengthMass (Da)Tools
Q8H2J9 [UniParc].

Last modified November 28, 2012. Version 3.
Checksum: 5A1D054CC6312A30

FASTA44046,762
        10         20         30         40         50         60 
MAAAAAATFL PHTPTPRRRL AVAVHSPTRR RLSLVFSGPP DGALSVAAAE EKADAGEEAA 

        70         80         90        100        110        120 
AAVSAPRGGG GGGGKERRRV VRKAWEKLVR WSRSWRRRNR SDVVETTRKV VVLGGGSFGT 

       130        140        150        160        170        180 
AMAAQVAAKK ADLEVSMLLR DDLVCRSINH SHINCKYLRD HRLPENITAT TSASDALAGA 

       190        200        210        220        230        240 
DFCFHAVPVQ FSSSFLEGIS THVDPKLPFI SLSKGLELNT LRTMSQIIPQ ALGNPRQPFI 

       250        260        270        280        290        300 
VLSGPSFAIE LMNKLPTAMV VASKDKKLAA AVQQLLASPN LRISTSNDVT GVEIAGALKN 

       310        320        330        340        350        360 
VLAIAAGIVE GMHLGNNCMA ALVAQGCSEI RWLATKMGAK PTTLSGLSGS GDIMLTCFVN 

       370        380        390        400        410        420 
LSRNRNVGLR LGSGEKLDEI MNSMNQVAEG VSTAGAVIAL AQKYHVKMPV LTAVARIIDN 

       430        440 
ELTPKKAVME LMNLPQVEEV 

« Hide

References

« Hide 'large scale' references
[1]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[3]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP005764 Genomic DNA. Translation: BAC84439.1. Sequence problems.
AP008213 Genomic DNA. Translation: BAF21142.1. Sequence problems.
AK065591 mRNA. Translation: BAG89576.1. Sequence problems.
RefSeqNP_001059228.1. NM_001065763.1.
UniGeneOs.18760.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING39947.LOC_Os07g12640.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4342770.
KEGGosa:4342770.

Organism-specific databases

GrameneQ8H2J9.

Phylogenomic databases

HOGENOMHOG000246853.

Enzyme and pathway databases

UniPathwayUPA00940.

Family and domain databases

Gene3D1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
HAMAPMF_00394. NAD_Glyc3P_dehydrog.
InterProIPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERPTHR11728. PTHR11728. 1 hit.
PfamPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view]
PRINTSPR00077. GPDHDRGNASE.
SUPFAMSSF48179. SSF48179. 1 hit.
PROSITEPS00957. NAD_G3PDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameGPDA_ORYSJ
AccessionPrimary (citable) accession number: Q8H2J9
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2012
Last sequence update: November 28, 2012
Last modified: May 14, 2014
This is version 99 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

PATHWAY comments

Index of metabolic and biosynthesis pathways