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Protein

Ethylene-responsive transcription factor RAP2-4

Gene

RAP2-4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi151 – 208AP2/ERFPROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

  • DNA binding Source: TAIR
  • sequence-specific DNA binding Source: TAIR
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • cellular response to salt stress Source: TAIR
  • cytokinin-activated signaling pathway Source: TAIR
  • ethylene-activated signaling pathway Source: TAIR
  • regulation of cell differentiation Source: TAIR
  • response to cold Source: TAIR
  • response to light stimulus Source: TAIR
  • response to osmotic stress Source: TAIR
  • response to salt stress Source: TAIR
  • response to water deprivation Source: TAIR
  • response to wounding Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionActivator, DNA-binding
Biological processEthylene signaling pathway, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor RAP2-4
Alternative name(s):
Ethylene-responsive transcription factor ERF059
Protein RELATED TO APETALA2 4
Gene namesi
Name:RAP2-4
Synonyms:ERF059
Ordered Locus Names:At1g78080
ORF Names:F28K19.29, T11I11.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G78080.
TAIRilocus:2029491. AT1G78080.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002979341 – 334Ethylene-responsive transcription factor RAP2-4Add BLAST334

Proteomic databases

PaxDbiQ8H1E4.

Expressioni

Tissue specificityi

Mostly expressed in roots and leaves. Also detected in flowers and stems.1 Publication

Gene expression databases

GenevisibleiQ8H1E4. AT.

Interactioni

Subunit structurei

Interacts with BTB/POZ-MATH proteins BPM1, BPM2, BPM3, BPM4, BPM5 and BPM6.1 Publication

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi29362. 6 interactors.
IntActiQ8H1E4. 15 interactors.
MINTiMINT-7262714.
STRINGi3702.AT1G78080.1.

Structurei

3D structure databases

ProteinModelPortaliQ8H1E4.
SMRiQ8H1E4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410IEJE. Eukaryota.
ENOG410YGN6. LUCA.
HOGENOMiHOG000239817.
InParanoidiQ8H1E4.
KOiK09286.
OMAiPEEPPQW.
OrthoDBiEOG09360R3E.
PhylomeDBiQ8H1E4.

Family and domain databases

CDDicd00018. AP2. 1 hit.
Gene3Di3.30.730.10. 1 hit.
InterProiView protein in InterPro
IPR001471. AP2/ERF_dom.
IPR036955. AP2/ERF_dom_sf.
IPR016177. DNA-bd_dom_sf.
PfamiView protein in Pfam
PF00847. AP2. 1 hit.
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiView protein in SMART
SM00380. AP2. 1 hit.
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiView protein in PROSITE
PS51032. AP2_ERF. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8H1E4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP
60 70 80 90 100
SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
110 120 130 140 150
QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK
160 170 180 190 200
LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
210 220 230 240 250
DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK
260 270 280 290 300
STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
310 320 330
DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
Length:334
Mass (Da):36,610
Last modified:March 1, 2003 - v1
Checksum:iE0A19F1DB535C372
GO

Sequence cautioni

The sequence AAF17691 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti122S → R in AAK43967 (PubMed:14593172).Curated1
Sequence conflicti215S → F in AAC49770 (PubMed:9192694).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009243 Genomic DNA. Translation: AAF17691.1. Different initiation.
AC012680 Genomic DNA. Translation: AAG52091.1.
CP002684 Genomic DNA. Translation: AEE36065.1.
AF370152 mRNA. Translation: AAK43967.1.
AY150468 mRNA. Translation: AAN12993.1.
AF003097 mRNA. Translation: AAC49770.1.
RefSeqiNP_177931.1. NM_106457.3.
UniGeneiAt.25524.
At.71798.

Genome annotation databases

EnsemblPlantsiAT1G78080.1; AT1G78080.1; AT1G78080.
GeneIDi844143.
GrameneiAT1G78080.1; AT1G78080.1; AT1G78080.
KEGGiath:AT1G78080.

Similar proteinsi

Entry informationi

Entry nameiRAP24_ARATH
AccessioniPrimary (citable) accession number: Q8H1E4
Secondary accession number(s): O23106
, Q94K95, Q9C9S5, Q9SGZ3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: March 1, 2003
Last modified: November 22, 2017
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families