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Protein

Ethylene-responsive transcription factor RAP2-4

Gene

RAP2-4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi151 – 20858AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: TAIR
  • sequence-specific DNA binding Source: TAIR
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • cellular response to salt stress Source: TAIR
  • cytokinin-activated signaling pathway Source: TAIR
  • ethylene-activated signaling pathway Source: TAIR
  • regulation of cell differentiation Source: TAIR
  • response to cold Source: TAIR
  • response to light stimulus Source: TAIR
  • response to osmotic stress Source: TAIR
  • response to salt stress Source: TAIR
  • response to water deprivation Source: TAIR
  • response to wounding Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor RAP2-4
Alternative name(s):
Ethylene-responsive transcription factor ERF059
Protein RELATED TO APETALA2 4
Gene namesi
Name:RAP2-4
Synonyms:ERF059
Ordered Locus Names:At1g78080
ORF Names:F28K19.29, T11I11.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G78080.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 334334Ethylene-responsive transcription factor RAP2-4PRO_0000297934Add
BLAST

Proteomic databases

PaxDbiQ8H1E4.
PRIDEiQ8H1E4.

Expressioni

Tissue specificityi

Mostly expressed in roots and leaves. Also detected in flowers and stems.1 Publication

Gene expression databases

GenevisibleiQ8H1E4. AT.

Interactioni

Subunit structurei

Interacts with BTB/POZ-MATH proteins BPM1, BPM2, BPM3, BPM4, BPM5 and BPM6.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
BPM1Q8L7655EBI-7528315,EBI-540891
BPM3O222862EBI-7528315,EBI-540923

Protein-protein interaction databases

BioGridi29362. 6 interactions.
IntActiQ8H1E4. 6 interactions.
MINTiMINT-7262714.
STRINGi3702.AT1G78080.1.

Structurei

3D structure databases

ProteinModelPortaliQ8H1E4.
SMRiQ8H1E4. Positions 150-208.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IEJE. Eukaryota.
ENOG410YGN6. LUCA.
HOGENOMiHOG000239817.
InParanoidiQ8H1E4.
KOiK09286.
OMAiAICKSMA.
OrthoDBiEOG09360R3E.
PhylomeDBiQ8H1E4.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8H1E4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP
60 70 80 90 100
SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
110 120 130 140 150
QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK
160 170 180 190 200
LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
210 220 230 240 250
DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK
260 270 280 290 300
STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
310 320 330
DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
Length:334
Mass (Da):36,610
Last modified:March 1, 2003 - v1
Checksum:iE0A19F1DB535C372
GO

Sequence cautioni

The sequence AAF17691 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti122 – 1221S → R in AAK43967 (PubMed:14593172).Curated
Sequence conflicti215 – 2151S → F in AAC49770 (PubMed:9192694).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009243 Genomic DNA. Translation: AAF17691.1. Different initiation.
AC012680 Genomic DNA. Translation: AAG52091.1.
CP002684 Genomic DNA. Translation: AEE36065.1.
AF370152 mRNA. Translation: AAK43967.1.
AY150468 mRNA. Translation: AAN12993.1.
AF003097 mRNA. Translation: AAC49770.1.
RefSeqiNP_177931.1. NM_106457.2.
UniGeneiAt.25524.
At.71798.

Genome annotation databases

EnsemblPlantsiAT1G78080.1; AT1G78080.1; AT1G78080.
GeneIDi844143.
GrameneiAT1G78080.1; AT1G78080.1; AT1G78080.
KEGGiath:AT1G78080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009243 Genomic DNA. Translation: AAF17691.1. Different initiation.
AC012680 Genomic DNA. Translation: AAG52091.1.
CP002684 Genomic DNA. Translation: AEE36065.1.
AF370152 mRNA. Translation: AAK43967.1.
AY150468 mRNA. Translation: AAN12993.1.
AF003097 mRNA. Translation: AAC49770.1.
RefSeqiNP_177931.1. NM_106457.2.
UniGeneiAt.25524.
At.71798.

3D structure databases

ProteinModelPortaliQ8H1E4.
SMRiQ8H1E4. Positions 150-208.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi29362. 6 interactions.
IntActiQ8H1E4. 6 interactions.
MINTiMINT-7262714.
STRINGi3702.AT1G78080.1.

Proteomic databases

PaxDbiQ8H1E4.
PRIDEiQ8H1E4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G78080.1; AT1G78080.1; AT1G78080.
GeneIDi844143.
GrameneiAT1G78080.1; AT1G78080.1; AT1G78080.
KEGGiath:AT1G78080.

Organism-specific databases

TAIRiAT1G78080.

Phylogenomic databases

eggNOGiENOG410IEJE. Eukaryota.
ENOG410YGN6. LUCA.
HOGENOMiHOG000239817.
InParanoidiQ8H1E4.
KOiK09286.
OMAiAICKSMA.
OrthoDBiEOG09360R3E.
PhylomeDBiQ8H1E4.

Miscellaneous databases

PROiQ8H1E4.

Gene expression databases

GenevisibleiQ8H1E4. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRAP24_ARATH
AccessioniPrimary (citable) accession number: Q8H1E4
Secondary accession number(s): O23106
, Q94K95, Q9C9S5, Q9SGZ3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: March 1, 2003
Last modified: September 7, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.