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Protein

ABC transporter F family member 3

Gene

ABCF3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi207 – 2148ATP 1PROSITE-ProRule annotation
Nucleotide bindingi537 – 5448ATP 2PROSITE-ProRule annotation

GO - Molecular functioni

  • ATPase activity Source: InterPro
  • ATP binding Source: UniProtKB-KW
  • transporter activity Source: TAIR

GO - Biological processi

  • defense response to bacterium Source: TAIR
  • response to cadmium ion Source: TAIR
Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter F family member 3
Short name:
ABC transporter ABCF.3
Short name:
AtABCF3
Alternative name(s):
GCN20-type ATP-binding cassette protein GCN3
Gene namesi
Name:ABCF3
Synonyms:GCN3
Ordered Locus Names:At1g64550
ORF Names:F1N19.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G64550.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedCombined sources
Chaini2 – 715714ABC transporter F family member 3PRO_0000274941Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylthreonineCombined sources

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ8H0V6.
PRIDEiQ8H0V6.

PTM databases

iPTMnetiQ8H0V6.

Expressioni

Gene expression databases

GenevisibleiQ8H0V6. AT.

Interactioni

Protein-protein interaction databases

BioGridi27984. 1 interaction.
STRINGi3702.AT1G64550.1.

Structurei

3D structure databases

ProteinModelPortaliQ8H0V6.
SMRiQ8H0V6. Positions 194-709.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini175 – 436262ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini504 – 713210ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0062. Eukaryota.
COG0488. LUCA.
HOGENOMiHOG000271637.
InParanoidiQ8H0V6.
KOiK06158.
OMAiFLADFPN.
PhylomeDBiQ8H0V6.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
InterProiIPR003593. AAA+_ATPase.
IPR032781. ABC_tran_Xtn.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
PF12848. ABC_tran_Xtn. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 3 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8H0V6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEVASSVVY EVLGRRAQDV DEPIMDYIIN VLADEDFDFG EEGEGAFDAV
60 70 80 90 100
GELLVAAECV SDFEECRLVC SKLSDKFGKH GLVKPTPTVR SLAMPVRMND
110 120 130 140 150
GMDDGPVKKK KPEPVDGPLL TERDLAKIER RKKKDDRQRE LQYQQHVAEM
160 170 180 190 200
EAAKAGMPTV SVNHDTGGGS AIRDIHMDNF NVSVGGRDLI VDGSITLSFG
210 220 230 240 250
RHYGLVGRNG TGKTTFLRYM AMHAIEGIPT NCQILHVEQE VVGDKTTALQ
260 270 280 290 300
CVLNTDIERT KLLEEEIQIL AKQRETEEPT AKDGMPTKDT VEGDLMSQRL
310 320 330 340 350
EEIYKRLDAI DAYTAEARAA SILAGLSFTP EMQLKATNTF SGGWRMRIAL
360 370 380 390 400
ARALFIEPDL LLLDEPTNHL DLHAVLWLET YLTKWPKTFI VVSHAREFLN
410 420 430 440 450
TVVTDIIHLQ NQKLSTYKGN YDIFERTREE QVKNQQKAFE SSERSRSHMQ
460 470 480 490 500
AFIDKFRYNA KRASLVQSRI KALDRLAHVD QVINDPDYKF EFPTPDDKPG
510 520 530 540 550
PPIISFSDAS FGYPGGPLLF RNLNFGIDLD SRIAMVGPNG IGKSTILKLI
560 570 580 590 600
SGDLQPSSGT VFRSAKVRVA VFSQHHVDGL DLSSNPLLYM MRCYPGVPEQ
610 620 630 640 650
KLRSHLGSLG VTGNLALQPM YTLSGGQKSR VAFAKITFKK PHLLLLDEPS
660 670 680 690 700
NHLDLDAVEA LIQGLVLFQG GICMVSHDEH LISGSVDELW VVSDGRIAPF
710
HGTFHDYKKL LQSST
Length:715
Mass (Da):79,644
Last modified:March 1, 2003 - v1
Checksum:i6CA38DEDFCD1D392
GO

Sequence cautioni

The sequence AAF19673.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At1g64540 has been split into 2 genes: At1g64540 and At1g64550.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009519 Genomic DNA. Translation: AAF19673.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE34252.1.
BT002015 mRNA. Translation: AAN72026.1.
BT010544 mRNA. Translation: AAQ65167.1.
PIRiA96669.
RefSeqiNP_176636.1. NM_105130.3.
UniGeneiAt.42980.

Genome annotation databases

EnsemblPlantsiAT1G64550.1; AT1G64550.1; AT1G64550.
GeneIDi842763.
GrameneiAT1G64550.1; AT1G64550.1; AT1G64550.
KEGGiath:AT1G64550.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009519 Genomic DNA. Translation: AAF19673.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE34252.1.
BT002015 mRNA. Translation: AAN72026.1.
BT010544 mRNA. Translation: AAQ65167.1.
PIRiA96669.
RefSeqiNP_176636.1. NM_105130.3.
UniGeneiAt.42980.

3D structure databases

ProteinModelPortaliQ8H0V6.
SMRiQ8H0V6. Positions 194-709.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi27984. 1 interaction.
STRINGi3702.AT1G64550.1.

PTM databases

iPTMnetiQ8H0V6.

Proteomic databases

PaxDbiQ8H0V6.
PRIDEiQ8H0V6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G64550.1; AT1G64550.1; AT1G64550.
GeneIDi842763.
GrameneiAT1G64550.1; AT1G64550.1; AT1G64550.
KEGGiath:AT1G64550.

Organism-specific databases

TAIRiAT1G64550.

Phylogenomic databases

eggNOGiKOG0062. Eukaryota.
COG0488. LUCA.
HOGENOMiHOG000271637.
InParanoidiQ8H0V6.
KOiK06158.
OMAiFLADFPN.
PhylomeDBiQ8H0V6.

Miscellaneous databases

PROiQ8H0V6.

Gene expression databases

GenevisibleiQ8H0V6. AT.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
InterProiIPR003593. AAA+_ATPase.
IPR032781. ABC_tran_Xtn.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
PF12848. ABC_tran_Xtn. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 3 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "The Arabidopsis thaliana ABC protein superfamily, a complete inventory."
    Sanchez-Fernandez R., Davies T.G., Coleman J.O., Rea P.A.
    J. Biol. Chem. 276:30231-30244(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  5. Cited for: GENE FAMILY, NOMENCLATURE.
  6. "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features."
    Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T., Giglione C.
    Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT THR-2, CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS], IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiAB3F_ARATH
AccessioniPrimary (citable) accession number: Q8H0V6
Secondary accession number(s): Q9SGW1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: March 1, 2003
Last modified: February 17, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.