Q8GX84 (C3H1_ARATH) Reviewed, UniProtKB/Swiss-Prot
Last modified
December 14, 2011.
Version 63.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Zinc finger CCCH domain-containing protein 1 Short name=AtC3H1 | ||||
| Gene names |
| ||||
| Organism | Arabidopsis thaliana (Mouse-ear cress) | ||||
| Taxonomic identifier | 3702 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Protein attributes
| Sequence length | 343 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Sequence similarities | Contains 1 C3H1-type zinc finger. Contains 1 RING-type zinc finger. |
| Sequence caution | The sequence AAF97335.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
| Keywords | |
|---|---|
| Domain | Zinc-finger |
| Ligand | DNA-binding Metal-binding Zinc |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Molecular function | DNA binding Inferred from electronic annotation. Source: UniProtKB-KW zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 343 | 343 | Zinc finger CCCH domain-containing protein 1 | PRO_0000371963 | |||||
Regions | |||||||||
| Zinc finger | 200 – 228 | 29 | C3H1-type | ||||||
| Zinc finger | 277 – 315 | 39 | RING-type | ||||||
Experimental info | |||||||||
| Sequence conflict | 232 | 1 | P → S in BAC42988. Ref.3 | ||||||
| Sequence conflict | 304 | 1 | H → R in BAC42988. Ref.3 | ||||||
Sequences
| ||||||||||||||||||
References
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC023628 Genomic DNA. Translation: AAF97335.1. Sequence problems. CP002684 Genomic DNA. Translation: AEE27275.1. AK118376 mRNA. Translation: BAC42988.1. |
| IPI | IPI00537158. |
| PIR | G86143. |
| RefSeq | NP_171642.2. NM_100017.2. |
| UniGene | At.48142. |
3D structure databases | |
| HSSP | HSSP built from PDB template 2CSY based on UniProtKB Q8IZP6. |
| ProteinModelPortal | Q8GX84. |
| SMR | Q8GX84. Positions 200-228, 265-337. |
| ModBase | Search... |
Proteomic databases | |
| PRIDE | Q8GX84. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | AT1G01350.1; AT1G01350.1; AT1G01350. |
| GeneID | 838964. |
| GenomeReviews | Gene locus AT1G01350 in contig CT485782_GR. |
| KEGG | ath:AT1G01350. |
Organism-specific databases | |
| TAIR | At1g01350. |
Phylogenomic databases | |
| eggNOG | KOG1813. |
| GeneTree | EPGT00050000008927. |
| HOGENOM | HBG738163. |
| InParanoid | Q8GX84. |
| PhylomeDB | Q8GX84. |
| ProtClustDB | CLSN2686864. |
Gene expression databases | |
| Genevestigator | Q8GX84. |
Family and domain databases | |
| InterPro | IPR018957. Znf_C3HC4_RING-type. IPR000571. Znf_CCCH. IPR001841. Znf_RING. IPR013083. Znf_RING/FYVE/PHD. IPR017907. Znf_RING_CS. [Graphical view] |
| Gene3D | G3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit. |
| KO | K13127. |
| Pfam | PF00097. zf-C3HC4. 1 hit. PF00642. zf-CCCH. 1 hit. [Graphical view] |
| SMART | SM00184. RING. 1 hit. SM00356. ZnF_C3H1. 1 hit. [Graphical view] |
| PROSITE | PS50103. ZF_C3H1. 1 hit. PS00518. ZF_RING_1. 1 hit. PS50089. ZF_RING_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | C3H1_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q8GX84 Secondary accession number(s): Q9LNI9 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| SIMILARITY comments Index of protein domains and families |

Clusters with