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Protein

Ethylene-responsive transcription factor ERF116

Gene

ERF116

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi80 – 14061AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • ethylene-activated signaling pathway Source: UniProtKB-KW
  • pollen development Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor ERF116
Gene namesi
Name:ERF116
Ordered Locus Names:At1g25470
ORF Names:F2J7.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G25470.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 287287Ethylene-responsive transcription factor ERF116PRO_0000290427Add
BLAST

Proteomic databases

PaxDbiQ8GW17.
PRIDEiQ8GW17.

Expressioni

Gene expression databases

GenevisibleiQ8GW17. AT.

Interactioni

Protein-protein interaction databases

BioGridi24370. 2 interactions.
IntActiQ8GW17. 2 interactions.
STRINGi3702.AT1G25470.1.

Structurei

3D structure databases

ProteinModelPortaliQ8GW17.
SMRiQ8GW17. Positions 79-139.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JKI1. Eukaryota.
ENOG41115X1. LUCA.
HOGENOMiHOG000090785.
InParanoidiQ8GW17.
OMAiSTRIWIG.
PhylomeDBiQ8GW17.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR017392. AP2/ERF-transcript_factor.
IPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PANTHERiPTHR31194. PTHR31194. 1 hit.
PIRSFiPIRSF038123. PTI6. 1 hit.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8GW17-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSFVKPERD SLLRTVRIVF TDPDATDDSS SSSDEWLPKP RKVKRFVHEI
60 70 80 90 100
TFLPQVSESS QDRSNAVKTP RRKSTRQFKY PVGVRPRPSG KFAAEILNPF
110 120 130 140 150
TKTKKWLGTY ETPAEAEKAY VDKKVEYDAL ASSGSAVSSS VVTVTSQCLR
160 170 180 190 200
SPTSASVSCV SADDLSKEKT SLNKDVAASG DSTTKEVFTT FDFSDVKIPD
210 220 230 240 250
LRFLAAEEDS MVSNANGAEL DFDCFLTDSN ILLDDYSLLE NDINFSRFEN
260 270 280
SLPSELPDCD FTEMEFQLDD FKFAYTDHLT TPPLGLV
Length:287
Mass (Da):31,992
Last modified:March 1, 2003 - v1
Checksum:i91843CCBAC492F18
GO

Sequence cautioni

The sequence AAG50818.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC079281 Genomic DNA. Translation: AAG50818.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE30628.1.
CP002684 Genomic DNA. Translation: AEE30629.1.
AK119144 mRNA. Translation: BAC43714.1.
BT005281 mRNA. Translation: AAO63345.1.
PIRiH86384.
RefSeqiNP_173918.2. NM_102358.4.
NP_973912.1. NM_202183.2.
UniGeneiAt.41335.
At.68159.

Genome annotation databases

EnsemblPlantsiAT1G25470.1; AT1G25470.1; AT1G25470.
AT1G25470.2; AT1G25470.2; AT1G25470.
GeneIDi839133.
GrameneiAT1G25470.1; AT1G25470.1; AT1G25470.
AT1G25470.2; AT1G25470.2; AT1G25470.
KEGGiath:AT1G25470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC079281 Genomic DNA. Translation: AAG50818.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE30628.1.
CP002684 Genomic DNA. Translation: AEE30629.1.
AK119144 mRNA. Translation: BAC43714.1.
BT005281 mRNA. Translation: AAO63345.1.
PIRiH86384.
RefSeqiNP_173918.2. NM_102358.4.
NP_973912.1. NM_202183.2.
UniGeneiAt.41335.
At.68159.

3D structure databases

ProteinModelPortaliQ8GW17.
SMRiQ8GW17. Positions 79-139.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi24370. 2 interactions.
IntActiQ8GW17. 2 interactions.
STRINGi3702.AT1G25470.1.

Proteomic databases

PaxDbiQ8GW17.
PRIDEiQ8GW17.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G25470.1; AT1G25470.1; AT1G25470.
AT1G25470.2; AT1G25470.2; AT1G25470.
GeneIDi839133.
GrameneiAT1G25470.1; AT1G25470.1; AT1G25470.
AT1G25470.2; AT1G25470.2; AT1G25470.
KEGGiath:AT1G25470.

Organism-specific databases

TAIRiAT1G25470.

Phylogenomic databases

eggNOGiENOG410JKI1. Eukaryota.
ENOG41115X1. LUCA.
HOGENOMiHOG000090785.
InParanoidiQ8GW17.
OMAiSTRIWIG.
PhylomeDBiQ8GW17.

Miscellaneous databases

PROiQ8GW17.

Gene expression databases

GenevisibleiQ8GW17. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR017392. AP2/ERF-transcript_factor.
IPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PANTHERiPTHR31194. PTHR31194. 1 hit.
PIRSFiPIRSF038123. PTI6. 1 hit.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Genome-wide analysis of the ERF gene family in Arabidopsis and rice."
    Nakano T., Suzuki K., Fujimura T., Shinshi H.
    Plant Physiol. 140:411-432(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiEF116_ARATH
AccessioniPrimary (citable) accession number: Q8GW17
Secondary accession number(s): Q9C6L7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: March 1, 2003
Last modified: May 11, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.