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Q8GVY2

- Q8GVY2_ORYSJ

UniProt

Q8GVY2 - Q8GVY2_ORYSJ

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Protein
Submitted name:

60S ribosomal protein L38, putative, expressed

Gene
OJ1612_A04.113, Os11g0433900, LOC_Os11g24610, OsJ_33784
Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Enzyme and pathway databases

ReactomeiREACT_208864. SRP-dependent cotranslational protein targeting to membrane.
REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
60S ribosomal protein L38, putative, expressedImported
Submitted name:
Os11g0433900 proteinImported
Submitted name:
Putative 60S ribosomal protein L38Imported
Submitted name:
Ribosomal L38e protein familyImported
Submitted name:
cDNA clone:001-031-H04, full insert sequenceImported
Gene namesi
Name:OJ1612_A04.113Imported
Synonyms:Os11g0433900Imported
Ordered Locus Names:LOC_Os11g24610Imported
ORF Names:OsJ_33784Imported
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 11, UP000000763: Chromosome 7

Subcellular locationi

GO - Cellular componenti

  1. cytosolic large ribosomal subunit Source: EnsemblPlants/Gramene
Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J61electron microscopy5.50k1-69[»]

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L38e family.UniRule annotation

Phylogenomic databases

KOiK02923.
OMAiMSIREDR.

Family and domain databases

InterProiIPR002675. Ribosomal_L38e.
[Graphical view]
PANTHERiPTHR10965. PTHR10965. 1 hit.
PfamiPF01781. Ribosomal_L38e. 1 hit.
[Graphical view]
ProDomiPD010361. Ribosomal_L38e. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q8GVY2-1 [UniParc]FASTAAdd to Basket

« Hide

MPKQIHEIKD FLLTARRKDA RSVRIKRTKD AVKFKVRCSK YLYTLCVFDA   50
DKANKLKQSL PPGLTVQEV 69
Length:69
Mass (Da):8,036
Last modified:October 1, 2003 - v2
Checksum:i96426F4352DC3DEA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC133931 Genomic DNA. Translation: AAX96401.1.
DP000010 Genomic DNA. Translation: ABA93131.1.
AP003960 Genomic DNA. Translation: BAC79676.1.
AP008217 Genomic DNA. Translation: BAF28164.1.
AK059679 mRNA. Translation: BAG87074.1.
CM000148 Genomic DNA. Translation: EAZ18243.1.
RefSeqiNP_001067801.1. NM_001074333.1.
UniGeneiOs.57689.

Genome annotation databases

EnsemblPlantsiOS07T0546700-01; OS07T0546700-01; OS07G0546700.
OS11T0433900-01; OS11T0433900-01; OS11G0433900.
GeneIDi4350406.
KEGGiosa:4350406.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC133931 Genomic DNA. Translation: AAX96401.1 .
DP000010 Genomic DNA. Translation: ABA93131.1 .
AP003960 Genomic DNA. Translation: BAC79676.1 .
AP008217 Genomic DNA. Translation: BAF28164.1 .
AK059679 mRNA. Translation: BAG87074.1 .
CM000148 Genomic DNA. Translation: EAZ18243.1 .
RefSeqi NP_001067801.1. NM_001074333.1.
UniGenei Os.57689.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3J61 electron microscopy 5.50 k 1-69 [» ]
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS07T0546700-01 ; OS07T0546700-01 ; OS07G0546700 .
OS11T0433900-01 ; OS11T0433900-01 ; OS11G0433900 .
GeneIDi 4350406.
KEGGi osa:4350406.

Phylogenomic databases

KOi K02923.
OMAi MSIREDR.

Enzyme and pathway databases

Reactomei REACT_208864. SRP-dependent cotranslational protein targeting to membrane.
REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Family and domain databases

InterProi IPR002675. Ribosomal_L38e.
[Graphical view ]
PANTHERi PTHR10965. PTHR10965. 1 hit.
Pfami PF01781. Ribosomal_L38e. 1 hit.
[Graphical view ]
ProDomi PD010361. Ribosomal_L38e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC clone:OJ1612_A04."
    Sasaki T., Matsumoto T., Yamamoto K.
    Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Cited for: NUCLEOTIDE SEQUENCE.
  3. "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice."
    Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K.
    , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y.
    Science 301:376-379(2003)
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications."
    The rice chromosomes 11 and 12 sequencing consortia
    BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "The map-based sequence of the rice genome."
    International Rice Genome Sequencing Project
    Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.
    , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T.
    Nature 436:793-800(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  7. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  8. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 11."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. "The Second Rice Annotation Project Meeting (RAP2)."
    The Rice Annotation Project (RAP)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. Buell C.R., Wing R.A., McCombie W.A., Ouyang S.
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  11. Buell R.
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  12. "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information."
    Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T.
    Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  13. Buell R.
    Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  14. "Improved gene annotation of the rice (Oryza sativa) genomes."
    Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  15. "Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana."
    The Rice Annotation Project (RAP)
    Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E.
    , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.
    Genome Res. 17:175-183(2007)
    Cited for: NUCLEOTIDE SEQUENCE.
  16. "The Rice Annotation Project Database (RAP-DB): 2008 update."
    The Rice Annotation Project (RAP)
    Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H.
    , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M.
    Nucleic Acids Res. 36:D1028-D1033(2008)
    Cited for: NUCLEOTIDE SEQUENCE.
  17. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  18. Cited for: NUCLEOTIDE SEQUENCE.
  19. "Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion."
    Gogala M., Becker T., Beatrix B., Armache J.P., Barrio-Garcia C., Berninghausen O., Beckmann R.
    Nature 506:107-110(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.50 ANGSTROMS).

Entry informationi

Entry nameiQ8GVY2_ORYSJ
AccessioniPrimary (citable) accession number: Q8GVY2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: October 1, 2003
Last modified: September 3, 2014
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteome

External Data

Dasty 3

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