Q8GV23 (Q8GV23_CHLRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Nucleic acid binding protein EMBL EDP08495.1

Submitted name:
Putative nucleic acid binding protein EMBL AAN77901.2

Gene names

Name:	Nab1 EMBL AAN77901.2
Synonyms:	NAB1 EMBL EDP08495.1
ORF Names:	CHLREDRAFT_126810 EMBL EDP08495.1

Organism

Chlamydomonas reinhardtii (Chlamydomonas smithii) EMBL AAN77901.2

Taxonomic identifier

3055 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Chlorophyta › Chlorophyceae › Chlamydomonadales › Chlamydomonadaceae › Chlamydomonas

Protein attributes

Sequence length	247 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 CSD (cold-shock) domain. RuleBase RU000407

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q8GV23 [UniParc]. Last modified June 1, 2003. Version 2. Checksum: BE733A420BAD6F5F	FASTA	247	26,539
	10 20 30 40 50 60 MGEQLRQQGT VKWFNATKGF GFITPGGGGE DLFVHQTNIN SEGFRSLREG EVVEFEVEAG 70 80 90 100 110 120 PDGRSKAVNV TGPGGAAPEG APRNFRGGGR GRGRARGARG GYAAAYGYPQ MAPVYPGYYF 130 140 150 160 170 180 FPADPTGRGR GRGGRGGAMP AMQGVMPGVA YPGMPMGGVG MEPTGEPSGL QVVVHNLPWS 190 200 210 220 230 240 CQWQQLKDHF KEWRVERADV VYDAWGRSRG FGTVRFTTKE DAATACDKLN NSQIDGRTIS VRLDRFA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The Chlamydomonas genome reveals the evolution of key animal and plant functions." Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P. , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R. Science 318:245-250(2007) [PubMed: 17932292] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CC-503 and CC-503 cw92 mt+ EMBL EDP08495.1.
[2]	"NAB1 is an RNA binding protein involved in the light-regulated differential expression of the light-harvesting antenna of Chlamydomonas reinhardtii." Mussgnug J.H., Wobbe L., Elles I., Claus C., Hamilton M., Fink A., Kahmann U., Kapazoglou A., Mullineaux C.W., Hippler M., Nickelsen J., Nixon P.J., Kruse O. Plant Cell 17:3409-3421(2005) [PubMed: 16284312] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY157846 Genomic DNA. Translation: AAN77901.2. DS496110 Genomic DNA. Translation: EDP08495.1.
RefSeq	XP_001696518.1. XM_001696466.1.
UniGene	Cre.3171.
3D structure databases
HSSP	HSSP built from PDB template 1HZA based on UniProtKB P41016.
ProteinModelPortal	Q8GV23.
SMR	Q8GV23. Positions 9-67.
ModBase	Search...
Proteomic databases
PRIDE	Q8GV23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	EDP08495; EDP08495; CHLREDRAFT_126810.
GeneID	5721889.
KEGG	cre:CHLREDRAFT_126810.
Phylogenomic databases
ProtClustDB	CLSN2922420.
Family and domain databases
InterPro	IPR019844. Cold-shock_CS. IPR011129. Cold_shock_prot. IPR002059. CSP_DNA-bd. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 1 hit. G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
Pfam	PF00313. CSD. 1 hit. PF00076. RRM_1. 1 hit. [Graphical view]
PRINTS	PR00050. COLDSHOCK.
SMART	SM00357. CSP. 1 hit. SM00360. RRM. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00352. COLD_SHOCK. 1 hit. PS50102. RRM. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q8GV23_CHLRE

Accession

Primary (citable) accession number: Q8GV23

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2003
Last sequence update:	June 1, 2003
Last modified:	December 14, 2011
This is version 63 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)