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Protein
Submitted name:

B12-independent glycerol dehydratase

Gene

dhaB1

Organism
Clostridium butyricum
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BRENDAi4.2.1.30. 1465.

Names & Taxonomyi

Protein namesi
Submitted name:
B12-independent glycerol dehydrataseImported
Submitted name:
Glycerol dehydrataseImported
Gene namesi
Name:dhaB1Imported
OrganismiClostridium butyricumImported
Taxonomic identifieri1492 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Interactioni

Protein-protein interaction databases

STRINGi632245.CLP_0756.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1R8WX-ray2.50A/B1-787[»]
1R9DX-ray1.80A/B1-787[»]
4MTJX-ray2.40A/B1-787[»]
SMRiQ8GEZ8. Positions 2-787.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini11 – 660650PFLInterPro annotationAdd
BLAST
Domaini667 – 787121Glycine radicalInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains glycine radical domain.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105C6N. Bacteria.
COG1882. LUCA.

Family and domain databases

InterProiIPR019777. Form_AcTrfase_GR_CS.
IPR001150. Gly_radical.
IPR010098. PFL2/GDeHydtase_fam.
IPR004184. PFL_dom.
[Graphical view]
PfamiPF01228. Gly_radical. 1 hit.
PF02901. PFL-like. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01774. PFL2-3. 1 hit.
PROSITEiPS00850. GLY_RADICAL_1. 1 hit.
PS51149. GLY_RADICAL_2. 1 hit.
PS51554. PFL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8GEZ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MISKGFSTQT ERINILKAQI LNAKPCVESE RAILITESFK QTEGQPAILR
60 70 80 90 100
RALALKHILE NIPITIRDQE LIVGSLTKEP RSSQVFPEFS NKWLQDELDR
110 120 130 140 150
LNKRTGDAFQ ISEESKEKLK DVFEYWNGKT TSELATSYMT EETREAVNCD
160 170 180 190 200
VFTVGNYYYN GVGHVSVDYG KVLRVGFNGI INEAKEQLEK NRSIDPDFIK
210 220 230 240 250
KEKFLNSVII SCEAAITYVN RYAKKAKEIA DNTSDAKRKA ELNEIAKICS
260 270 280 290 300
KVSGEGAKSF YEACQLFWFI HAIINIESNG HSISPARFDQ YMYPYYENDK
310 320 330 340 350
NITDKFAQEL IDCIWIKLND INKVRDEIST KHFGGYPMYQ NLIVGGQNSE
360 370 380 390 400
GKDATNKVSY MALEAAVHVK LPQPSLSVRI WNKTPDEFLL RAAELTREGL
410 420 430 440 450
GLPAYYNDEV IIPALVSRGL TLEDARDYGI IGCVEPQKPG KTEGWHDSAF
460 470 480 490 500
FNLARIVELT INSGFDKNKQ IGPKTQNFEE MKSFDEFMKA YKAQMEYFVK
510 520 530 540 550
HMCCADNCID IAHAERAPLP FLSSMVDNCI GKGKSLQDGG AEYNFSGPQG
560 570 580 590 600
VGVANIGDSL VAVKKIVFDE NKITPSELKK TLNNDFKNSE EIQALLKNAP
610 620 630 640 650
KFGNDIDEVD NLAREGALVY CREVNKYTNP RGGNFQPGLY PSSINVYFGS
660 670 680 690 700
LTGATPDGRK SGQPLADGVS PSRGCDVSGP TAACNSVSKL DHFIASNGTL
710 720 730 740 750
FNQKFHPSAL KGDNGLMNLS SLIRSYFDQK GFHVQFNVID KKILLAAQKN
760 770 780
PEKYQDLIVR VAGYSAQFIS LDKSIQNDII ARTEHVM
Length:787
Mass (Da):88,047
Last modified:March 1, 2003 - v1
Checksum:iFFA583B740F38939
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY112989 Genomic DNA. Translation: AAM54728.1.
JQ346526 Genomic DNA. Translation: AFH58722.1.
RefSeqiWP_002581613.1. NZ_CP013489.1.

Genome annotation databases

GeneIDi23626425.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY112989 Genomic DNA. Translation: AAM54728.1.
JQ346526 Genomic DNA. Translation: AFH58722.1.
RefSeqiWP_002581613.1. NZ_CP013489.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1R8WX-ray2.50A/B1-787[»]
1R9DX-ray1.80A/B1-787[»]
4MTJX-ray2.40A/B1-787[»]
SMRiQ8GEZ8. Positions 2-787.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi632245.CLP_0756.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi23626425.

Phylogenomic databases

eggNOGiENOG4105C6N. Bacteria.
COG1882. LUCA.

Enzyme and pathway databases

BRENDAi4.2.1.30. 1465.

Family and domain databases

InterProiIPR019777. Form_AcTrfase_GR_CS.
IPR001150. Gly_radical.
IPR010098. PFL2/GDeHydtase_fam.
IPR004184. PFL_dom.
[Graphical view]
PfamiPF01228. Gly_radical. 1 hit.
PF02901. PFL-like. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01774. PFL2-3. 1 hit.
PROSITEiPS00850. GLY_RADICAL_1. 1 hit.
PS51149. GLY_RADICAL_2. 1 hit.
PS51554. PFL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ8GEZ8_CLOBU
AccessioniPrimary (citable) accession number: Q8GEZ8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: September 7, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.