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Protein

Putative pre-16S rRNA nuclease

Gene

BRA0597

Organism
Brucella suis biovar 1 (strain 1330)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Nuclease

Keywords - Biological processi

Ribosome biogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pre-16S rRNA nucleaseUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Ordered Locus Names:BRA0597, BS1330_II0592
OrganismiBrucella suis biovar 1 (strain 1330)
Taxonomic identifieri204722 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000007104 Componenti: Chromosome II

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 162162Putative pre-16S rRNA nucleasePRO_0000172033Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ8FW65.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the YqgF nuclease family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000016953.
KOiK07447.
OMAiPMGWTAQ.
OrthoDBiEOG6N94FV.

Family and domain databases

Gene3Di3.30.420.140. 1 hit.
HAMAPiMF_00651. Nuclease_YqgF.
InterProiIPR012337. RNaseH-like_dom.
IPR005227. YqgF.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF03652. RuvX. 1 hit.
[Graphical view]
SMARTiSM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
TIGRFAMsiTIGR00250. RNAse_H_YqgF. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8FW65-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAEIEEIP ALLKPGQTVA GLDLGTKTIG LAVSDLGLSF AHPRPVIKRV
60 70 80 90 100
KFTIDAQVLL KALETDKVGV IVIGLPMNMD GTAGPRVQAT RAFVRTMQPL
110 120 130 140 150
TDLPFVFWDE RLSTVAAERA LIGMDVSRGK RADRIDSAAA AFILQGALDR
160
LHMMRRNDYD AG
Length:162
Mass (Da):17,526
Last modified:March 1, 2003 - v1
Checksum:i75BBAF07458EBDB5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014292 Genomic DNA. Translation: AAN33786.1.
CP002998 Genomic DNA. Translation: AEM20063.1.
RefSeqiWP_004684953.1. NZ_KN046805.1.

Genome annotation databases

EnsemblBacteriaiAAN33786; AAN33786; BRA0597.
AEM20063; AEM20063; BS1330_II0592.
KEGGibms:BRA0597.
bsi:BS1330_II0592.
PATRICi17794001. VBIBruSui107850_2814.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014292 Genomic DNA. Translation: AAN33786.1.
CP002998 Genomic DNA. Translation: AEM20063.1.
RefSeqiWP_004684953.1. NZ_KN046805.1.

3D structure databases

ProteinModelPortaliQ8FW65.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN33786; AAN33786; BRA0597.
AEM20063; AEM20063; BS1330_II0592.
KEGGibms:BRA0597.
bsi:BS1330_II0592.
PATRICi17794001. VBIBruSui107850_2814.

Phylogenomic databases

HOGENOMiHOG000016953.
KOiK07447.
OMAiPMGWTAQ.
OrthoDBiEOG6N94FV.

Family and domain databases

Gene3Di3.30.420.140. 1 hit.
HAMAPiMF_00651. Nuclease_YqgF.
InterProiIPR012337. RNaseH-like_dom.
IPR005227. YqgF.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF03652. RuvX. 1 hit.
[Graphical view]
SMARTiSM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
TIGRFAMsiTIGR00250. RNAse_H_YqgF. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1330.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1330.

Entry informationi

Entry nameiYQGF_BRUSU
AccessioniPrimary (citable) accession number: Q8FW65
Secondary accession number(s): G0KCX5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 16, 2003
Last sequence update: March 1, 2003
Last modified: January 20, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella suis
    Brucella suis (strain 1330): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.