Q8FRE7 (SSRP_COREF) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
SsrA-binding protein

Gene names

Name:	smpB
Ordered Locus Names:	CE0814

Organism

Corynebacterium efficiens [Complete proteome] [HAMAP]

Taxonomic identifier

152794 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Corynebacteriaceae › Corynebacterium

Protein attributes

Sequence length	164 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes By similarity. HAMAP MF_00023
Subcellular location	Cytoplasm Potential HAMAP MF_00023.
Sequence similarities	Belongs to the SmpB family.

Ontologies

Keywords
Cellular component	Cytoplasm
Ligand	RNA-binding
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 164	164	SsrA-binding protein HAMAP MF_00023		PRO_0000102938

Sequences

	Sequence		Length	Mass (Da)
	Q8FRE7 [UniParc]. Last modified March 1, 2003. Version 1. Checksum: 9FDACF0B2EBC72DC	FASTA	164	18,935
	10 20 30 40 50 60 MAKKKKKVDE NNQVLATNRK ARHDYQILDT WEAGVVLLGT EIKSLREGKA SLVDAFAVID 70 80 90 100 110 120 NGEVWLHNLH IPTYSMGSWT NHSPKRTRKL LLHRREIDSL MGKVRDGNRT LVPLKLYLVN 130 140 150 160 GRVKLELGLA QGKQDYDKRQ DIKRRTEERE VTRELGRRIK GINA

References

[1]

"Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens." Nishio Y., Nakamura Y., Kawarabayasi Y., Usuda Y., Kimura E., Sugimoto S., Matsui K., Yamagishi A., Kikuchi H., Ikeo K., Gojobori T. Genome Res. 13:1572-1579(2003) [PubMed: 12840036] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000035 Genomic DNA. Translation: BAC17624.1.
RefSeq	NP_737424.1. NC_004369.1.
3D structure databases
ProteinModelPortal	Q8FRE7.
SMR	Q8FRE7. Positions 14-133.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1032920.
GenomeReviews	Gene locus CE0814 in contig BA000035_GR.
KEGG	cef:CE0814.
NMPDR	fig|196164.1.peg.814.
PATRIC	21487792. VBICorEff9312_0836.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG293422.
OMA	EKYEAGI.
PhylomeDB	Q8FRE7.
ProtClustDB	PRK05422.
Enzyme and pathway databases
BioCyc	CEFF196164:CE0814-MONOMER.
Family and domain databases
HAMAP	MF_00023. SmpB. [Tree]
InterPro	IPR023620. SmpB. IPR000037. SsrA-bd_prot. IPR020081. SsrA-bd_prot_CS. [Graphical view]
Gene3D	G3DSA:2.40.280.10. SmpB. 1 hit.
KO	K03664.
Pfam	PF01668. SmpB. 1 hit. [Graphical view]
ProDom	PD004488. SmpB. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF74982. SmpB. 1 hit.
TIGRFAMs	TIGR00086. SmpB. 1 hit.
PROSITE	PS01317. SSRP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

SSRP_COREF

Accession

Primary (citable) accession number: Q8FRE7

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 25, 2003
Last sequence update:	March 1, 2003
Last modified:	January 25, 2012
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program