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Q8FQ12

- GLGB_COREF

UniProt

Q8FQ12 - GLGB_COREF

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei408 – 4081NucleophileUniRule annotation
Active sitei461 – 4611Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

UniPathwayiUPA00164.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:CE1323
OrganismiCorynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Taxonomic identifieri196164 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeCorynebacteriaceaeCorynebacterium
ProteomesiUP000001409: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7317311,4-alpha-glucan branching enzyme GlgBPRO_0000188698Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi196164.CE1323.

Structurei

3D structure databases

ProteinModelPortaliQ8FQ12.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000283037.
KOiK00700.
OMAiISEGRHE.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8FQ12-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTPASANDLL IPEEDLNRLR HCHHHNPHGF YGWHATDDGS VIRTRQIGAE
60 70 80 90 100
KVELVLGDTQ IVMNPIGDDI FAIKLGNREA FDYRLRVTWP GQDPVVTADP
110 120 130 140 150
YIFLPTLGEM DTYLISEGRH ERLWDVLGAN VKTYETTLGQ VRGTAFAVWA
160 170 180 190 200
PNAIGVAVIG GFNGWNASQH AMRSLGGSGI WELFIPNIGP GEVYKFAIQT
210 220 230 240 250
REGHRRDKAD PMARLAELPP ATGSIVVESD YQWQDSEWMD KRAEIDTATT
260 270 280 290 300
PMSVYEVHLG SWRWGRSYAE LATELVDYVA DLGYTHVEFM PVAEHPFGGS
310 320 330 340 350
WGYQVSGYYA PTSRWGSPDE LRKLIDAFHA RGIGVIIDWV PAHFPKDDWA
360 370 380 390 400
LARFDGQALY EHPDWRRGEQ KDWGTYVFNF GRSEVRNFLV ANALYWLEEF
410 420 430 440 450
HVDGLRVDAV ASMLYLDYSR EHGEWEPNVY GGRENLEAVQ FLQEMNATVQ
460 470 480 490 500
RVHPGALTIA EESTSWPGVT APTWDGGLGF SLKWNMGWMN DTLEYFSKDP
510 520 530 540 550
IHRSFHHNEL TFSLVYAFSE RFVLPISHDE VVHGKGSLWN RMPGDTWNKA
560 570 580 590 600
AGMRTLLAYM WAHPGKKLLF MGQEIGQRDE WSEAHELPWG VVEGWQGEYH
610 620 630 640 650
EGISDLVREL NSTYKEVTAL HQRDFSGEGF TWNKADDASN NILVFTRHGD
660 670 680 690 700
DGSQALCVFN LSGTSQPEYQ IGVSGGGSWR LVLNTDDEQY HGANNPLPET
710 720 730
IEAEKIDRDG FPYTTTLHSP AMSAQFYVWE G
Length:731
Mass (Da):82,714
Last modified:March 1, 2003 - v1
Checksum:i63B5690B96EDBB4E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000035 Genomic DNA. Translation: BAC18133.1.
RefSeqiNP_737933.1. NC_004369.1.

Genome annotation databases

EnsemblBacteriaiBAC18133; BAC18133; BAC18133.
GeneIDi1033641.
KEGGicef:CE1323.
PATRICi21488782. VBICorEff9312_1324.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000035 Genomic DNA. Translation: BAC18133.1 .
RefSeqi NP_737933.1. NC_004369.1.

3D structure databases

ProteinModelPortali Q8FQ12.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 196164.CE1323.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAC18133 ; BAC18133 ; BAC18133 .
GeneIDi 1033641.
KEGGi cef:CE1323.
PATRICi 21488782. VBICorEff9312_1324.

Phylogenomic databases

HOGENOMi HOG000283037.
KOi K00700.
OMAi ISEGRHE.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens."
    Nishio Y., Nakamura Y., Kawarabayasi Y., Usuda Y., Kimura E., Sugimoto S., Matsui K., Yamagishi A., Kikuchi H., Ikeo K., Gojobori T.
    Genome Res. 13:1572-1579(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395.

Entry informationi

Entry nameiGLGB_COREF
AccessioniPrimary (citable) accession number: Q8FQ12
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 15, 2003
Last sequence update: March 1, 2003
Last modified: October 29, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3