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Protein

HTH-type transcriptional regulator YidZ

Gene

yidZ

Organism
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Involved in anaerobic NO protection.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi25 – 44H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator YidZUniRule annotation
Gene namesi
Name:yidZUniRule annotation
Ordered Locus Names:c4634
OrganismiEscherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Taxonomic identifieri199310 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000001410 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001058031 – 319HTH-type transcriptional regulator YidZAdd BLAST319

Interactioni

Protein-protein interaction databases

STRINGi199310.c4634.

Structurei

3D structure databases

ProteinModelPortaliQ8FBU9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 65HTH lysR-typeUniRule annotationAdd BLAST58

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105G2Y. Bacteria.
ENOG410XRYC. LUCA.
HOGENOMiHOG000103694.
OMAiLDKPHHE.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_01607. HTH_type_YidZ. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR023746. Tscrpt_reg_YidZ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8FBU9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSITTLDL NLLLCLQLLM QERSVTKAAK RMNVTPSAVS KSLAKLRAWF
60 70 80 90 100
DDPLFVNSPL GLSPTPLMVS MEQNLAEWMQ MSNLLLDKPH HQTPRGLKFE
110 120 130 140 150
LAAESPLMMI MLNALSKRIY QRYPQATIKL RNWDYDSLDA ITRGEVDIGF
160 170 180 190 200
SGRESHPRSR ELLSSLPLAI DYEVLFSDVP CVWLRKDHPA LHEAWNLDTF
210 220 230 240 250
LRYPHISICW EQSDTWALDN VLQELGRERT IAMSLPEFEQ SLFMAAQPDN
260 270 280 290 300
LLLATAPRYC QYYNQLHQLP LVALPLPFDE SQQKKLEVPF TLLWHKRNSR
310
NPKIVWLRET IKNLYASMA
Length:319
Mass (Da):36,918
Last modified:March 15, 2005 - v2
Checksum:i96E28F19C7556DAE
GO

Sequence cautioni

The sequence AAN83066 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014075 Genomic DNA. Translation: AAN83066.1. Different initiation.
RefSeqiWP_000748500.1. NC_004431.1.

Genome annotation databases

EnsemblBacteriaiAAN83066; AAN83066; c4634.
KEGGiecc:c4634.
PATRICi18286955. VBIEscCol75197_4351.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014075 Genomic DNA. Translation: AAN83066.1. Different initiation.
RefSeqiWP_000748500.1. NC_004431.1.

3D structure databases

ProteinModelPortaliQ8FBU9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi199310.c4634.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN83066; AAN83066; c4634.
KEGGiecc:c4634.
PATRICi18286955. VBIEscCol75197_4351.

Phylogenomic databases

eggNOGiENOG4105G2Y. Bacteria.
ENOG410XRYC. LUCA.
HOGENOMiHOG000103694.
OMAiLDKPHHE.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_01607. HTH_type_YidZ. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR023746. Tscrpt_reg_YidZ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIDZ_ECOL6
AccessioniPrimary (citable) accession number: Q8FBU9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2005
Last sequence update: March 15, 2005
Last modified: November 2, 2016
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.