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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciOIHE221109:G1G3F-166-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
Ordered Locus Names:OB0134
OrganismiOceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)
Taxonomic identifieri221109 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeOceanobacillus
Proteomesi
  • UP000000822 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002609081 – 17850S ribosomal protein L6Add BLAST178

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi221109.OB0134

Structurei

3D structure databases

ProteinModelPortaliQ8ETW8
SMRiQ8ETW8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL6 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108R5J Bacteria
COG0097 LUCA
HOGENOMiHOG000039903
KOiK02933
OMAiINNMVVG
OrthoDBiPOG091H029Q

Family and domain databases

Gene3Di3.90.930.12, 2 hits
HAMAPiMF_01365_B Ribosomal_L6_B, 1 hit
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR019906 Ribosomal_L6_bac-type
IPR002358 Ribosomal_L6_CS
PANTHERiPTHR11655 PTHR11655, 1 hit
PTHR11655:SF14 PTHR11655:SF14, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
PRINTSiPR00059 RIBOSOMALL6
SUPFAMiSSF56053 SSF56053, 2 hits
TIGRFAMsiTIGR03654 L6_bact, 1 hit
PROSITEiView protein in PROSITE
PS00525 RIBOSOMAL_L6_1, 1 hit

Sequencei

Sequence statusi: Complete.

Q8ETW8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRVGLKPVE IPEGVELKLD NNTVTVKGPK GELSRELHPD MKINIEDNVL
60 70 80 90 100
TVERPSDHKE HRALHGTTRS LINNMVIGVS KGFEKSLEII GVGYRAQKQG
110 120 130 140 150
DKTVINAGYS HPVELEAIDG IEIEVPKNTQ ITVKGIDKEL VGAIAANIRA
160 170
IRPPEPYKGK GIRYTDEYVR RKEGKTAK
Length:178
Mass (Da):19,698
Last modified:March 1, 2003 - v1
Checksum:iEACE27F13D17F51A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000028 Genomic DNA Translation: BAC12090.1
RefSeqiWP_011064537.1, NC_004193.1

Genome annotation databases

EnsemblBacteriaiBAC12090; BAC12090; BAC12090
KEGGioih:OB0134

Similar proteinsi

Entry informationi

Entry nameiRL6_OCEIH
AccessioniPrimary (citable) accession number: Q8ETW8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: March 1, 2003
Last modified: March 28, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health