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Q8ETW8 (RL6_OCEIH) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L6
Gene names
Name:rplF
Ordered Locus Names:OB0134
OrganismOceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) [Complete proteome] [HAMAP]
Taxonomic identifier221109 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeOceanobacillus

Protein attributes

Sequence length178 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01365

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 17817850S ribosomal protein L6 HAMAP-Rule MF_01365
PRO_0000260908

Sequences

Sequence LengthMass (Da)Tools
Q8ETW8 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: EACE27F13D17F51A

FASTA17819,698
        10         20         30         40         50         60 
MSRVGLKPVE IPEGVELKLD NNTVTVKGPK GELSRELHPD MKINIEDNVL TVERPSDHKE 

        70         80         90        100        110        120 
HRALHGTTRS LINNMVIGVS KGFEKSLEII GVGYRAQKQG DKTVINAGYS HPVELEAIDG 

       130        140        150        160        170 
IEIEVPKNTQ ITVKGIDKEL VGAIAANIRA IRPPEPYKGK GIRYTDEYVR RKEGKTAK 

« Hide

References

[1]"Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments."
Takami H., Takaki Y., Uchiyama I.
Nucleic Acids Res. 30:3927-3935(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14371 / JCM 11309 / KCTC 3954 / HTE831.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000028 Genomic DNA. Translation: BAC12090.1.
RefSeqNP_691055.1. NC_004193.1.

3D structure databases

ProteinModelPortalQ8ETW8.
SMRQ8ETW8. Positions 8-170.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING221109.OB0134.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC12090; BAC12090; BAC12090.
GeneID1015230.
KEGGoih:OB0134.
PATRIC22791137. VBIOceIhe82024_0135.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0097.
HOGENOMHOG000039903.
KOK02933.
OMAAANKNAR.
OrthoDBEOG67DPRD.

Enzyme and pathway databases

BioCycOIHE221109:GI2A-164-MONOMER.

Family and domain databases

Gene3D3.90.930.12. 2 hits.
HAMAPMF_01365_B. Ribosomal_L6_B.
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
PANTHERPTHR11655. PTHR11655. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSPR00059. RIBOSOMALL6.
SUPFAMSSF56053. SSF56053. 2 hits.
TIGRFAMsTIGR03654. L6_bact. 1 hit.
PROSITEPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL6_OCEIH
AccessionPrimary (citable) accession number: Q8ETW8
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: March 1, 2003
Last modified: June 11, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries