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Protein

UPF0352 protein SO_2176

Gene

SO_2176

Organism
Shewanella oneidensis (strain MR-1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0352 protein SO_2176UniRule annotation
Gene namesi
Ordered Locus Names:SO_2176
OrganismiShewanella oneidensis (strain MR-1)
Taxonomic identifieri211586 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000008186 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7272UPF0352 protein SO_2176PRO_0000201799Add
BLAST

Proteomic databases

PaxDbiQ8EF26.

Interactioni

Protein-protein interaction databases

STRINGi211586.SO_2176.

Structurei

Secondary structure

1
72
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 2618Combined sources
Helixi30 – 4819Combined sources
Helixi51 – 7222Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JUWNMR-A/B1-72[»]
2QTIX-ray2.30A1-72[»]
ProteinModelPortaliQ8EF26.
SMRiQ8EF26. Positions 1-72.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8EF26.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0352 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105YDX. Bacteria.
COG3082. LUCA.
HOGENOMiHOG000218499.
KOiK09904.
OMAiHQAPTDL.
OrthoDBiEOG615VPH.
PhylomeDBiQ8EF26.

Family and domain databases

Gene3Di1.10.3390.10. 1 hit.
HAMAPiMF_00816. UPF0352.
InterProiIPR009857. UPF0352.
IPR023202. YejL_dom.
[Graphical view]
PfamiPF07208. DUF1414. 1 hit.
[Graphical view]
PIRSFiPIRSF006188. UCP006188. 1 hit.
ProDomiPD027794. UPF0352. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q8EF26-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAIQSKYSNT QVESLIAEIL VVLEKHKAPT DLSLMALGNC VTHLLERKVP
60 70
SESRQAVAEQ FAKALAQSVK SN
Length:72
Mass (Da):7,865
Last modified:March 1, 2003 - v1
Checksum:i984329157B05567D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN55220.1.
RefSeqiNP_717776.1. NC_004347.2.
WP_011072212.1. NC_004347.2.

Genome annotation databases

EnsemblBacteriaiAAN55220; AAN55220; SO_2176.
GeneIDi1169914.
KEGGison:SO_2176.
PATRICi23523972. VBISheOne101494_2092.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN55220.1.
RefSeqiNP_717776.1. NC_004347.2.
WP_011072212.1. NC_004347.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JUWNMR-A/B1-72[»]
2QTIX-ray2.30A1-72[»]
ProteinModelPortaliQ8EF26.
SMRiQ8EF26. Positions 1-72.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi211586.SO_2176.

Proteomic databases

PaxDbiQ8EF26.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN55220; AAN55220; SO_2176.
GeneIDi1169914.
KEGGison:SO_2176.
PATRICi23523972. VBISheOne101494_2092.

Phylogenomic databases

eggNOGiENOG4105YDX. Bacteria.
COG3082. LUCA.
HOGENOMiHOG000218499.
KOiK09904.
OMAiHQAPTDL.
OrthoDBiEOG615VPH.
PhylomeDBiQ8EF26.

Miscellaneous databases

EvolutionaryTraceiQ8EF26.

Family and domain databases

Gene3Di1.10.3390.10. 1 hit.
HAMAPiMF_00816. UPF0352.
InterProiIPR009857. UPF0352.
IPR023202. YejL_dom.
[Graphical view]
PfamiPF07208. DUF1414. 1 hit.
[Graphical view]
PIRSFiPIRSF006188. UCP006188. 1 hit.
ProDomiPD027794. UPF0352. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MR-1.

Entry informationi

Entry nameiY2176_SHEON
AccessioniPrimary (citable) accession number: Q8EF26
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: March 1, 2003
Last modified: December 9, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.