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Protein

UPF0352 protein SO_2176

Gene

SO_2176

Organism
Shewanella oneidensis (strain MR-1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0352 protein SO_2176UniRule annotation
Gene namesi
Ordered Locus Names:SO_2176
OrganismiShewanella oneidensis (strain MR-1)
Taxonomic identifieri211586 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000008186 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7272UPF0352 protein SO_2176PRO_0000201799Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi211586.SO_2176.

Structurei

Secondary structure

1
72
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 2618Combined sources
Helixi30 – 4819Combined sources
Helixi51 – 7222Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JUWNMR-A/B1-72[»]
2QTIX-ray2.30A1-72[»]
SMRiQ8EF26. Positions 1-72.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8EF26.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0352 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG3082.
HOGENOMiHOG000218499.
KOiK09904.
OMAiHQAPTDL.
OrthoDBiEOG615VPH.
PhylomeDBiQ8EF26.

Family and domain databases

Gene3Di1.10.3390.10. 1 hit.
HAMAPiMF_00816. UPF0352.
InterProiIPR009857. UPF0352.
IPR023202. YejL_dom.
[Graphical view]
PfamiPF07208. DUF1414. 1 hit.
[Graphical view]
PIRSFiPIRSF006188. UCP006188. 1 hit.
ProDomiPD027794. UPF0352. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q8EF26-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAIQSKYSNT QVESLIAEIL VVLEKHKAPT DLSLMALGNC VTHLLERKVP
60 70
SESRQAVAEQ FAKALAQSVK SN
Length:72
Mass (Da):7,865
Last modified:February 28, 2003 - v1
Checksum:i984329157B05567D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN55220.1.
RefSeqiNP_717776.1. NC_004347.2.

Genome annotation databases

EnsemblBacteriaiAAN55220; AAN55220; SO_2176.
GeneIDi1169914.
KEGGison:SO_2176.
PATRICi23523972. VBISheOne101494_2092.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN55220.1.
RefSeqiNP_717776.1. NC_004347.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JUWNMR-A/B1-72[»]
2QTIX-ray2.30A1-72[»]
SMRiQ8EF26. Positions 1-72.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi211586.SO_2176.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN55220; AAN55220; SO_2176.
GeneIDi1169914.
KEGGison:SO_2176.
PATRICi23523972. VBISheOne101494_2092.

Phylogenomic databases

eggNOGiCOG3082.
HOGENOMiHOG000218499.
KOiK09904.
OMAiHQAPTDL.
OrthoDBiEOG615VPH.
PhylomeDBiQ8EF26.

Miscellaneous databases

EvolutionaryTraceiQ8EF26.

Family and domain databases

Gene3Di1.10.3390.10. 1 hit.
HAMAPiMF_00816. UPF0352.
InterProiIPR009857. UPF0352.
IPR023202. YejL_dom.
[Graphical view]
PfamiPF07208. DUF1414. 1 hit.
[Graphical view]
PIRSFiPIRSF006188. UCP006188. 1 hit.
ProDomiPD027794. UPF0352. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MR-1.

Entry informationi

Entry nameiY2176_SHEON
AccessioniPrimary (citable) accession number: Q8EF26
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 21, 2005
Last sequence update: February 28, 2003
Last modified: March 31, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.