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Q8EDM4

- DEOD3_SHEON

UniProt

Q8EDM4 - DEOD3_SHEON

Protein

Purine nucleoside phosphorylase DeoD-type

Gene

deoD3

Organism
Shewanella oneidensis (strain MR-1)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (01 Mar 2003)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
    Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. purine nucleoside metabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purine nucleoside phosphorylase DeoD-typeUniRule annotation (EC:2.4.2.1UniRule annotation)
    Short name:
    PNPUniRule annotation
    Gene namesi
    Name:deoD3UniRule annotation
    Ordered Locus Names:SO_2719
    OrganismiShewanella oneidensis (strain MR-1)
    Taxonomic identifieri211586 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000008186: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 234234Purine nucleoside phosphorylase DeoD-typePRO_0000063161Add
    BLAST

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Protein-protein interaction databases

    STRINGi211586.SO_2719.

    Structurei

    Secondary structure

    1
    234
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi14 – 185
    Helixi22 – 3110
    Beta strandi34 – 407
    Helixi42 – 443
    Beta strandi47 – 526
    Beta strandi55 – 606
    Helixi66 – 7914
    Beta strandi84 – 9310
    Beta strandi103 – 11210
    Helixi115 – 1195
    Turni120 – 1223
    Helixi131 – 14313
    Beta strandi148 – 1558
    Helixi166 – 1727
    Beta strandi177 – 1815
    Helixi182 – 19211
    Beta strandi195 – 20511
    Turni206 – 2083
    Helixi214 – 23219

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4LKRX-ray2.40A1-234[»]
    ProteinModelPortaliQ8EDM4.
    SMRiQ8EDM4. Positions 2-233.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PNP/UDP phosphorylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0813.
    HOGENOMiHOG000274896.
    KOiK03784.
    OMAiHMATSAT.
    OrthoDBiEOG6BKJC5.
    PhylomeDBiQ8EDM4.

    Family and domain databases

    Gene3Di3.40.50.1580. 1 hit.
    HAMAPiMF_01627. Pur_nucleosid_phosp.
    InterProiIPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view]
    PANTHERiPTHR21234. PTHR21234. 1 hit.
    PfamiPF01048. PNP_UDP_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53167. SSF53167. 1 hit.
    TIGRFAMsiTIGR00107. deoD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q8EDM4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTAHINAQPT DFAETVIMPG DPLRAKYIAE TYLTDAVEVT NVRNMLGYTG    50
    YYQGQRISVM GHGMGISSMV LYGHELINFF GVKRIIRIGS LGATQQHVEM 100
    RDVILAQAAG TDSPTNAKRS SGYHMATSAT FSLLHKAYTK ANEKGISVKV 150
    GNVFSGDLYY DPDEDMIPAL ERFGVLGIDM EVAGLYGLAH QQGIESLAIL 200
    TVSDHCLTGE ETTAQERQLS FNNMIELALE TALN 234
    Length:234
    Mass (Da):25,529
    Last modified:March 1, 2003 - v1
    Checksum:i666F9D55C6001908
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014299 Genomic DNA. Translation: AAN55747.1.
    RefSeqiNP_718303.1. NC_004347.2.
    WP_011072663.1. NC_004347.2.

    Genome annotation databases

    EnsemblBacteriaiAAN55747; AAN55747; SO_2719.
    GeneIDi1170418.
    KEGGison:SO_2719.
    PATRICi23525059. VBISheOne101494_2619.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014299 Genomic DNA. Translation: AAN55747.1 .
    RefSeqi NP_718303.1. NC_004347.2.
    WP_011072663.1. NC_004347.2.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4LKR X-ray 2.40 A 1-234 [» ]
    ProteinModelPortali Q8EDM4.
    SMRi Q8EDM4. Positions 2-233.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 211586.SO_2719.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAN55747 ; AAN55747 ; SO_2719 .
    GeneIDi 1170418.
    KEGGi son:SO_2719.
    PATRICi 23525059. VBISheOne101494_2619.

    Phylogenomic databases

    eggNOGi COG0813.
    HOGENOMi HOG000274896.
    KOi K03784.
    OMAi HMATSAT.
    OrthoDBi EOG6BKJC5.
    PhylomeDBi Q8EDM4.

    Family and domain databases

    Gene3Di 3.40.50.1580. 1 hit.
    HAMAPi MF_01627. Pur_nucleosid_phosp.
    InterProi IPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view ]
    PANTHERi PTHR21234. PTHR21234. 1 hit.
    Pfami PF01048. PNP_UDP_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53167. SSF53167. 1 hit.
    TIGRFAMsi TIGR00107. deoD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MR-1.

    Entry informationi

    Entry nameiDEOD3_SHEON
    AccessioniPrimary (citable) accession number: Q8EDM4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 10, 2006
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3