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Q8EDM4

- DEOD3_SHEON

UniProt

Q8EDM4 - DEOD3_SHEON

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Protein

Purine nucleoside phosphorylase DeoD-type

Gene

deoD3

Organism
Shewanella oneidensis (strain MR-1)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. purine nucleoside metabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-typeUniRule annotation (EC:2.4.2.1UniRule annotation)
Short name:
PNPUniRule annotation
Gene namesi
Name:deoD3UniRule annotation
Ordered Locus Names:SO_2719
OrganismiShewanella oneidensis (strain MR-1)
Taxonomic identifieri211586 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000008186: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 234234Purine nucleoside phosphorylase DeoD-typePRO_0000063161Add
BLAST

Interactioni

Subunit structurei

Homohexamer.UniRule annotation

Protein-protein interaction databases

STRINGi211586.SO_2719.

Structurei

Secondary structure

1
234
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi14 – 185Combined sources
Helixi22 – 3110Combined sources
Beta strandi34 – 407Combined sources
Helixi42 – 443Combined sources
Beta strandi47 – 526Combined sources
Beta strandi55 – 606Combined sources
Helixi66 – 7914Combined sources
Beta strandi84 – 9310Combined sources
Beta strandi103 – 11210Combined sources
Helixi115 – 1195Combined sources
Turni120 – 1223Combined sources
Helixi131 – 14313Combined sources
Beta strandi148 – 1558Combined sources
Helixi166 – 1727Combined sources
Beta strandi177 – 1815Combined sources
Helixi182 – 19211Combined sources
Beta strandi195 – 20511Combined sources
Turni206 – 2083Combined sources
Helixi214 – 23219Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4LKRX-ray2.40A1-234[»]
ProteinModelPortaliQ8EDM4.
SMRiQ8EDM4. Positions 2-233.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PNP/UDP phosphorylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0813.
HOGENOMiHOG000274896.
KOiK03784.
OMAiHMATSAT.
OrthoDBiEOG6BKJC5.
PhylomeDBiQ8EDM4.

Family and domain databases

Gene3Di3.40.50.1580. 1 hit.
HAMAPiMF_01627. Pur_nucleosid_phosp.
InterProiIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERiPTHR21234. PTHR21234. 1 hit.
PfamiPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMiSSF53167. SSF53167. 1 hit.
TIGRFAMsiTIGR00107. deoD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8EDM4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTAHINAQPT DFAETVIMPG DPLRAKYIAE TYLTDAVEVT NVRNMLGYTG
60 70 80 90 100
YYQGQRISVM GHGMGISSMV LYGHELINFF GVKRIIRIGS LGATQQHVEM
110 120 130 140 150
RDVILAQAAG TDSPTNAKRS SGYHMATSAT FSLLHKAYTK ANEKGISVKV
160 170 180 190 200
GNVFSGDLYY DPDEDMIPAL ERFGVLGIDM EVAGLYGLAH QQGIESLAIL
210 220 230
TVSDHCLTGE ETTAQERQLS FNNMIELALE TALN
Length:234
Mass (Da):25,529
Last modified:March 1, 2003 - v1
Checksum:i666F9D55C6001908
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN55747.1.
RefSeqiNP_718303.1. NC_004347.2.

Genome annotation databases

EnsemblBacteriaiAAN55747; AAN55747; SO_2719.
GeneIDi1170418.
KEGGison:SO_2719.
PATRICi23525059. VBISheOne101494_2619.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN55747.1 .
RefSeqi NP_718303.1. NC_004347.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4LKR X-ray 2.40 A 1-234 [» ]
ProteinModelPortali Q8EDM4.
SMRi Q8EDM4. Positions 2-233.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 211586.SO_2719.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAN55747 ; AAN55747 ; SO_2719 .
GeneIDi 1170418.
KEGGi son:SO_2719.
PATRICi 23525059. VBISheOne101494_2619.

Phylogenomic databases

eggNOGi COG0813.
HOGENOMi HOG000274896.
KOi K03784.
OMAi HMATSAT.
OrthoDBi EOG6BKJC5.
PhylomeDBi Q8EDM4.

Family and domain databases

Gene3Di 3.40.50.1580. 1 hit.
HAMAPi MF_01627. Pur_nucleosid_phosp.
InterProi IPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view ]
PANTHERi PTHR21234. PTHR21234. 1 hit.
Pfami PF01048. PNP_UDP_1. 1 hit.
[Graphical view ]
SUPFAMi SSF53167. SSF53167. 1 hit.
TIGRFAMsi TIGR00107. deoD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MR-1.

Entry informationi

Entry nameiDEOD3_SHEON
AccessioniPrimary (citable) accession number: Q8EDM4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: March 1, 2003
Last modified: November 26, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3