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Protein

UPF0301 protein SO_3346

Gene

SO_3346

Organism
Shewanella oneidensis (strain MR-1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0301 protein SO_3346UniRule annotation
Gene namesi
Ordered Locus Names:SO_3346
OrganismiShewanella oneidensis (strain MR-1)
Taxonomic identifieri211586 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000008186 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 187187UPF0301 protein SO_3346PRO_0000214346Add
BLAST

Proteomic databases

PaxDbiQ8EBZ9.

Interactioni

Protein-protein interaction databases

STRINGi211586.SO_3346.

Structurei

Secondary structure

1
187
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 117Combined sources
Beta strandi19 – 279Combined sources
Beta strandi37 – 393Combined sources
Helixi48 – 558Combined sources
Beta strandi72 – 754Combined sources
Turni79 – 813Combined sources
Beta strandi85 – 884Combined sources
Beta strandi93 – 953Combined sources
Beta strandi99 – 1068Combined sources
Helixi110 – 1156Combined sources
Helixi133 – 1364Combined sources
Helixi139 – 1457Combined sources
Beta strandi148 – 1514Combined sources
Helixi154 – 1574Combined sources
Helixi164 – 1718Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GZONMR-A1-187[»]
ProteinModelPortaliQ8EBZ9.
SMRiQ8EBZ9. Positions 1-187.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8EBZ9.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0301 (AlgH) family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UJU. Bacteria.
COG1678. LUCA.
HOGENOMiHOG000281193.
KOiK07735.
OMAiIYICAHS.
OrthoDBiPOG091H06A0.
PhylomeDBiQ8EBZ9.

Family and domain databases

HAMAPiMF_00758. UPF0301. 1 hit.
InterProiIPR003774. UPF0301.
[Graphical view]
PfamiPF02622. DUF179. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8EBZ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESLQNHFLI AMPSLDDTFF ERTVIYLCEH DEKGAMGLVI NKPLGIEVNS
60 70 80 90 100
LLEQMDLPTE QVSADLAMGS QVLMGGPVSQ DRGFVLHTSQ PYWANSTELG
110 120 130 140 150
SGLMLTTSRD VLTAIGSKRS PDKFLVALGY AGWSKNQLEQ ELADNSWLTI
160 170 180
PADHALLFDI NHEDRWQQAS RSLGFEAWQL STQAGHA
Length:187
Mass (Da):20,707
Last modified:March 1, 2003 - v1
Checksum:i94F0C8BFED77FFF1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN56344.1.
RefSeqiNP_718900.1. NC_004347.2.
WP_011073216.1. NC_004347.2.

Genome annotation databases

EnsemblBacteriaiAAN56344; AAN56344; SO_3346.
GeneIDi1171028.
KEGGison:SO_3346.
PATRICi23526366. VBISheOne101494_3246.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN56344.1.
RefSeqiNP_718900.1. NC_004347.2.
WP_011073216.1. NC_004347.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GZONMR-A1-187[»]
ProteinModelPortaliQ8EBZ9.
SMRiQ8EBZ9. Positions 1-187.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi211586.SO_3346.

Proteomic databases

PaxDbiQ8EBZ9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN56344; AAN56344; SO_3346.
GeneIDi1171028.
KEGGison:SO_3346.
PATRICi23526366. VBISheOne101494_3246.

Phylogenomic databases

eggNOGiENOG4108UJU. Bacteria.
COG1678. LUCA.
HOGENOMiHOG000281193.
KOiK07735.
OMAiIYICAHS.
OrthoDBiPOG091H06A0.
PhylomeDBiQ8EBZ9.

Miscellaneous databases

EvolutionaryTraceiQ8EBZ9.

Family and domain databases

HAMAPiMF_00758. UPF0301. 1 hit.
InterProiIPR003774. UPF0301.
[Graphical view]
PfamiPF02622. DUF179. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY3346_SHEON
AccessioniPrimary (citable) accession number: Q8EBZ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: March 1, 2003
Last modified: September 7, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.