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Protein

UPF0301 protein SO_3346

Gene

SO_3346

Organism
Shewanella oneidensis (strain MR-1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSONE211586:GK2N-3009-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0301 protein SO_3346UniRule annotation
Gene namesi
Ordered Locus Names:SO_3346
OrganismiShewanella oneidensis (strain MR-1)
Taxonomic identifieri211586 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000008186 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002143461 – 187UPF0301 protein SO_3346Add BLAST187

Proteomic databases

PaxDbiQ8EBZ9.

Interactioni

Protein-protein interaction databases

STRINGi211586.SO_3346.

Structurei

Secondary structure

1187
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 11Combined sources7
Beta strandi19 – 27Combined sources9
Beta strandi37 – 39Combined sources3
Helixi48 – 55Combined sources8
Beta strandi72 – 75Combined sources4
Turni79 – 81Combined sources3
Beta strandi85 – 88Combined sources4
Beta strandi93 – 95Combined sources3
Beta strandi99 – 106Combined sources8
Helixi110 – 115Combined sources6
Helixi133 – 136Combined sources4
Helixi139 – 145Combined sources7
Beta strandi148 – 151Combined sources4
Helixi154 – 157Combined sources4
Helixi164 – 171Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GZONMR-A1-187[»]
ProteinModelPortaliQ8EBZ9.
SMRiQ8EBZ9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8EBZ9.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0301 (AlgH) family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UJU. Bacteria.
COG1678. LUCA.
HOGENOMiHOG000281193.
KOiK07735.
OMAiIYICAHS.
OrthoDBiPOG091H06A0.
PhylomeDBiQ8EBZ9.

Family and domain databases

HAMAPiMF_00758. UPF0301. 1 hit.
InterProiIPR003774. UPF0301.
[Graphical view]
PfamiPF02622. DUF179. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8EBZ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESLQNHFLI AMPSLDDTFF ERTVIYLCEH DEKGAMGLVI NKPLGIEVNS
60 70 80 90 100
LLEQMDLPTE QVSADLAMGS QVLMGGPVSQ DRGFVLHTSQ PYWANSTELG
110 120 130 140 150
SGLMLTTSRD VLTAIGSKRS PDKFLVALGY AGWSKNQLEQ ELADNSWLTI
160 170 180
PADHALLFDI NHEDRWQQAS RSLGFEAWQL STQAGHA
Length:187
Mass (Da):20,707
Last modified:March 1, 2003 - v1
Checksum:i94F0C8BFED77FFF1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN56344.1.
RefSeqiNP_718900.1. NC_004347.2.
WP_011073216.1. NC_004347.2.

Genome annotation databases

EnsemblBacteriaiAAN56344; AAN56344; SO_3346.
GeneIDi1171028.
KEGGison:SO_3346.
PATRICi23526366. VBISheOne101494_3246.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014299 Genomic DNA. Translation: AAN56344.1.
RefSeqiNP_718900.1. NC_004347.2.
WP_011073216.1. NC_004347.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GZONMR-A1-187[»]
ProteinModelPortaliQ8EBZ9.
SMRiQ8EBZ9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi211586.SO_3346.

Proteomic databases

PaxDbiQ8EBZ9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN56344; AAN56344; SO_3346.
GeneIDi1171028.
KEGGison:SO_3346.
PATRICi23526366. VBISheOne101494_3246.

Phylogenomic databases

eggNOGiENOG4108UJU. Bacteria.
COG1678. LUCA.
HOGENOMiHOG000281193.
KOiK07735.
OMAiIYICAHS.
OrthoDBiPOG091H06A0.
PhylomeDBiQ8EBZ9.

Enzyme and pathway databases

BioCyciSONE211586:GK2N-3009-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ8EBZ9.

Family and domain databases

HAMAPiMF_00758. UPF0301. 1 hit.
InterProiIPR003774. UPF0301.
[Graphical view]
PfamiPF02622. DUF179. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY3346_SHEON
AccessioniPrimary (citable) accession number: Q8EBZ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: March 1, 2003
Last modified: November 2, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.