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Protein

Protein PsbN

Gene

psbN

Organism
Thermosynechococcus elongatus (strain BP-1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May play a role in photosystem I and II biogenesis.UniRule annotation

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Protein PsbNUniRule annotation
Gene namesi
Name:psbNUniRule annotation
Ordered Locus Names:tsr1387
OrganismiThermosynechococcus elongatus (strain BP-1)
Taxonomic identifieri197221 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesSynechococcaceaeThermosynechococcus
Proteomesi
  • UP000000440 Componenti: Chromosome

Subcellular locationi

  • Cellular thylakoid membrane UniRule annotation; Single-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei7 – 29HelicalUniRule annotationAdd BLAST23

GO - Cellular componenti

Keywords - Cellular componenti

Membrane, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002079741 – 43Protein PsbNAdd BLAST43

Interactioni

Protein-protein interaction databases

STRINGi197221.tsr1387.

Structurei

3D structure databases

SMRiQ8DJ42.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PsbN family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410686T. Bacteria.
ENOG410XVHD. LUCA.
HOGENOMiHOG000091198.
KOiK02715.
OrthoDBiPOG091H13CD.

Family and domain databases

HAMAPiMF_00293. PSII_PsbN. 1 hit.
InterProiView protein in InterPro
IPR003398. PSII_PsbN.
PfamiView protein in Pfam
PF02468. PsbN. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD005510. PSII_PsbN. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8DJ42-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MEPATVLSIA LAAVCIGVTG YSIYLSFGPP SKELADPFDD HED
Length:43
Mass (Da):4,541
Last modified:March 1, 2003 - v1
Checksum:iF9E1A548F83E7B6A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000039 Genomic DNA. Translation: BAC08939.1.
RefSeqiNP_682177.1. NC_004113.1.
WP_011057227.1. NC_004113.1.

Genome annotation databases

EnsemblBacteriaiBAC08939; BAC08939; BAC08939.
GeneIDi1010805.
KEGGitel:tsr1387.
PATRICi23928124. VBITheElo119873_1459.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000039 Genomic DNA. Translation: BAC08939.1.
RefSeqiNP_682177.1. NC_004113.1.
WP_011057227.1. NC_004113.1.

3D structure databases

SMRiQ8DJ42.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi197221.tsr1387.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC08939; BAC08939; BAC08939.
GeneIDi1010805.
KEGGitel:tsr1387.
PATRICi23928124. VBITheElo119873_1459.

Phylogenomic databases

eggNOGiENOG410686T. Bacteria.
ENOG410XVHD. LUCA.
HOGENOMiHOG000091198.
KOiK02715.
OrthoDBiPOG091H13CD.

Family and domain databases

HAMAPiMF_00293. PSII_PsbN. 1 hit.
InterProiView protein in InterPro
IPR003398. PSII_PsbN.
PfamiView protein in Pfam
PF02468. PsbN. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD005510. PSII_PsbN. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiPSBN_THEEB
AccessioniPrimary (citable) accession number: Q8DJ42
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 30, 2003
Last sequence update: March 1, 2003
Last modified: May 10, 2017
This is version 71 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Originally thought to be a component of PSII; based on experiments in Synechocystis, N.tabacum and barley, and its absence from PSII in this organism and T.vulcanus, this is probably not true.UniRule annotation1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.