Superoxide dismutase - Thermosynechococcus elongatus (strain BP-1)

Preferred order of sections

Names and origin

Protein names

Recommended name:
Superoxide dismutase RuleBase RU000414
EC=1.15.1.1 RuleBase RU000414

Gene names

Name:

sodB EMBL BAC09071.1

Organism

Thermosynechococcus elongatus (strain BP-1) [Reference proteome] [HAMAP] EMBL BAC09071.1

Taxonomic identifier

197221 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Thermosynechococcus ›

Protein attributes

Sequence length	200 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000414
Catalytic activity	2 superoxide + 2 H⁺ = O₂ + H₂O₂. RuleBase RU000414
Sequence similarities	Belongs to the iron/manganese superoxide dismutase family. RuleBase RU004477

Ontologies

Keywords
Ligand	Iron PDB 1MY6 Metal-binding PDB 1MY6
Molecular function	Oxidoreductase RuleBase RU000414
Technical term	3D-structure PDB 1MY6 Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	superoxide metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW superoxide dismutase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

28

1

Iron; via tele nitrogen PDB 1MY6

Metal binding

80

1

Iron; via tele nitrogen PDB 1MY6

Metal binding

162

1

Iron PDB 1MY6

Metal binding

166

1

Iron; via tele nitrogen PDB 1MY6

Sequences

Sequence

Length

Mass (Da)

Tools

Q8DIR2 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: 666877141AEE800B
Show »

FASTA

200

22,216

        10         20         30         40         50         60 
MAFVQEPLPF DPGALEPYGM SAKTLEFHYG KHHKGYVDNL NKLTQDTELA DKSLEDVIRT 

        70         80         90        100        110        120 
TYGDAAKVGI FNNAAQVWNH TFFWNSLKPG GGGVPTGDVA ARINSAFGSY DEFKAQFKNA 

       130        140        150        160        170        180 
AATQFGSGWA WLVLEAGTLK VTKTANAENP LVHGQVPLLT IDVWEHAYYL DYQNRRPDFI 

       190        200 
DNFLNQLVNW DFVAKNLAAA

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1." Nakamura Y., Kaneko T., Sato S., Ikeuchi M., Katoh H., Sasamoto S., Watanabe A., Iriguchi M., Kawashima K., Kimura T., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Nakazaki N., Shimpo S., Sugimoto M. , Takeuchi C., Yamada M., Tabata S. DNA Res. 9:123-130(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BP-1 EMBL BAC09071.1.
[2]	"The 1.6 A resolution structure of Fe-superoxide dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus." Kerfeld C.A., Yoshida S., Tran K.T., Yeates T.O., Cascio D., Bottin H., Berthomieu C., Sugiura M., Boussac A. J. Biol. Inorg. Chem. 8:707-714(2003) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 2-200 IN COMPLEX WITH IRON.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000039 Genomic DNA. Translation: BAC09071.1.

RefSeq

NP_682309.1. NC_004113.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1MY6	X-ray	1.60	A/B	2-200	[»]

ProteinModelPortal

Q8DIR2.

SMR

Q8DIR2. Positions 2-199.

ModBase

Search...

Protein-protein interaction databases

STRING

197221.tll1519.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

BAC09071; BAC09071; BAC09071.

GeneID

1011132.

KEGG

tel:tll1519.

PATRIC

23928402. VBITheElo119873_1596.

Phylogenomic databases

eggNOG

COG0605.

HOGENOM

HOG000013584.

KO

K04564.

OMA

NCMAPNG.

ProtClustDB

CLSK287551.

Family and domain databases

InterPro

IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]

PANTHER

PTHR11404. PTHR11404. 1 hit.

Pfam

PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]

PIRSF

PIRSF000349. SODismutase. 1 hit.

PRINTS

PR01703. MNSODISMTASE.

SUPFAM

SSF46609. SODismutase. 1 hit.
SSF54719. SODismutase. 1 hit.

PROSITE

PS00088. SOD_MN. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

Q8DIR2.

Entry information

Entry name

Q8DIR2_THEEB

Accession

Primary (citable) accession number: Q8DIR2

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2003
Last sequence update:	March 1, 2003
Last modified:	May 1, 2013
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)