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Protein

Superoxide dismutase

Gene

sodB

Organism
Thermosynechococcus elongatus (strain BP-1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi28Divalent metal cationUniRule annotation1
Metal bindingi28Iron; via tele nitrogenCombined sources1
Metal bindingi80Divalent metal cationUniRule annotation1
Metal bindingi80Iron; via tele nitrogenCombined sources1
Metal bindingi162Divalent metal cationUniRule annotation1
Metal bindingi162IronCombined sources1
Metal bindingi166Divalent metal cationUniRule annotation1
Metal bindingi166Iron; via tele nitrogenCombined sources1

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductaseUniRule annotation
LigandIronCombined sources, Metal-bindingUniRule annotationCombined sources

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
OrganismiThermosynechococcus elongatus (strain BP-1)Imported
Taxonomic identifieri197221 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesSynechococcaceaeThermosynechococcus
Proteomesi
  • UP000000440 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi197221.tll1519.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1MY6X-ray1.60A/B2-200[»]
ProteinModelPortaliQ8DIR2.
SMRiQ8DIR2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8DIR2.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 88Sod_Fe_NInterPro annotationAdd BLAST83
Domaini95 – 195Sod_Fe_CInterPro annotationAdd BLAST101

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CK4. Bacteria.
COG0605. LUCA.
HOGENOMiHOG000013584.
KOiK04564.
OMAiKWGSFDK.
OrthoDBiPOG091H03Q7.

Family and domain databases

InterProiView protein in InterPro
IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
PfamiView protein in Pfam
PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiView protein in PROSITE
PS00088. SOD_MN. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8DIR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFVQEPLPF DPGALEPYGM SAKTLEFHYG KHHKGYVDNL NKLTQDTELA
60 70 80 90 100
DKSLEDVIRT TYGDAAKVGI FNNAAQVWNH TFFWNSLKPG GGGVPTGDVA
110 120 130 140 150
ARINSAFGSY DEFKAQFKNA AATQFGSGWA WLVLEAGTLK VTKTANAENP
160 170 180 190 200
LVHGQVPLLT IDVWEHAYYL DYQNRRPDFI DNFLNQLVNW DFVAKNLAAA
Length:200
Mass (Da):22,216
Last modified:March 1, 2003 - v1
Checksum:i666877141AEE800B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000039 Genomic DNA. Translation: BAC09071.1.
RefSeqiNP_682309.1. NC_004113.1.
WP_011057359.1. NC_004113.1.

Genome annotation databases

EnsemblBacteriaiBAC09071; BAC09071; BAC09071.
GeneIDi1011132.
KEGGitel:tll1519.
PATRICifig|197221.4.peg.1596.

Similar proteinsi

Entry informationi

Entry nameiQ8DIR2_THEEB
AccessioniPrimary (citable) accession number: Q8DIR2
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: August 30, 2017
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported