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Q8DIR2

- Q8DIR2_THEEB

UniProt

Q8DIR2 - Q8DIR2_THEEB

Protein

Superoxide dismutase

Gene

sodB

Organism
Thermosynechococcus elongatus (strain BP-1)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (01 Mar 2003)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation
    Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity.

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi28 – 281Iron; via tele nitrogenImported
    Metal bindingi80 – 801Iron; via tele nitrogenImported
    Metal bindingi162 – 1621IronImported
    Metal bindingi166 – 1661Iron; via tele nitrogenImported

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Ligandi

    IronImported, Metal-bindingImported

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodBImported
    OrganismiThermosynechococcus elongatus (strain BP-1)Imported
    Taxonomic identifieri197221 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesThermosynechococcus
    ProteomesiUP000000440: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi197221.tll1519.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1MY6X-ray1.60A/B2-200[»]
    ProteinModelPortaliQ8DIR2.
    SMRiQ8DIR2. Positions 2-199.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ8DIR2.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0605.
    HOGENOMiHOG000013584.
    KOiK04564.
    OMAiWTWLVKG.
    OrthoDBiEOG63NMNT.

    Family and domain databases

    InterProiIPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view]
    PANTHERiPTHR11404. PTHR11404. 1 hit.
    PfamiPF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000349. SODismutase. 1 hit.
    PRINTSiPR01703. MNSODISMTASE.
    SUPFAMiSSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEiPS00088. SOD_MN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8DIR2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAFVQEPLPF DPGALEPYGM SAKTLEFHYG KHHKGYVDNL NKLTQDTELA    50
    DKSLEDVIRT TYGDAAKVGI FNNAAQVWNH TFFWNSLKPG GGGVPTGDVA 100
    ARINSAFGSY DEFKAQFKNA AATQFGSGWA WLVLEAGTLK VTKTANAENP 150
    LVHGQVPLLT IDVWEHAYYL DYQNRRPDFI DNFLNQLVNW DFVAKNLAAA 200
    Length:200
    Mass (Da):22,216
    Last modified:March 1, 2003 - v1
    Checksum:i666877141AEE800B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000039 Genomic DNA. Translation: BAC09071.1.
    RefSeqiNP_682309.1. NC_004113.1.

    Genome annotation databases

    EnsemblBacteriaiBAC09071; BAC09071; BAC09071.
    GeneIDi1011132.
    KEGGitel:tll1519.
    PATRICi23928402. VBITheElo119873_1596.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000039 Genomic DNA. Translation: BAC09071.1 .
    RefSeqi NP_682309.1. NC_004113.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1MY6 X-ray 1.60 A/B 2-200 [» ]
    ProteinModelPortali Q8DIR2.
    SMRi Q8DIR2. Positions 2-199.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 197221.tll1519.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAC09071 ; BAC09071 ; BAC09071 .
    GeneIDi 1011132.
    KEGGi tel:tll1519.
    PATRICi 23928402. VBITheElo119873_1596.

    Phylogenomic databases

    eggNOGi COG0605.
    HOGENOMi HOG000013584.
    KOi K04564.
    OMAi WTWLVKG.
    OrthoDBi EOG63NMNT.

    Miscellaneous databases

    EvolutionaryTracei Q8DIR2.

    Family and domain databases

    InterProi IPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view ]
    PANTHERi PTHR11404. PTHR11404. 1 hit.
    Pfami PF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000349. SODismutase. 1 hit.
    PRINTSi PR01703. MNSODISMTASE.
    SUPFAMi SSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEi PS00088. SOD_MN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BP-1Imported.
    2. "The 1.6 A resolution structure of Fe-superoxide dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus."
      Kerfeld C.A., Yoshida S., Tran K.T., Yeates T.O., Cascio D., Bottin H., Berthomieu C., Sugiura M., Boussac A.
      J. Biol. Inorg. Chem. 8:707-714(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 2-200 IN COMPLEX WITH IRON.

    Entry informationi

    Entry nameiQ8DIR2_THEEB
    AccessioniPrimary (citable) accession number: Q8DIR2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 1, 2003
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3