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Protein

Photosystem II reaction center protein Z

Gene

psbZ

Organism
Thermosynechococcus elongatus (strain BP-1)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. May also aid in binding of PsbK, Ycf12 and the oxygen-evolving complex to PSII, at least in vitro. PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H2O, generating a proton gradient subsequently used for ATP formation.UniRule annotation4 Publications

Cofactori

Note: PSII binds multiple chlorophylls, carotenoids and specific lipids.11 Publications

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Photosynthesis

Names & Taxonomyi

Protein namesi
Recommended name:
Photosystem II reaction center protein ZUniRule annotation
Short name:
PSII-ZUniRule annotation
Gene namesi
Name:psbZUniRule annotation
Ordered Locus Names:tsr1967
OrganismiThermosynechococcus elongatus (strain BP-1)
Taxonomic identifieri197221 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesSynechococcaceaeThermosynechococcus
Proteomesi
  • UP000000440 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 10Lumenal10
Transmembranei11 – 24HelicalUniRule annotation1 PublicationAdd BLAST14
Topological domaini25 – 38Cytoplasmic1 PublicationAdd BLAST14
Transmembranei39 – 53HelicalUniRule annotation1 PublicationAdd BLAST15
Topological domaini54 – 62Lumenal1 Publication9

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane, Photosystem II, Reaction center, Thylakoid

Pathology & Biotechi

Disruption phenotypei

Cells grow normally under all light regimes tested; it is dispensable for photoautotrophic growth. The deletion strain is more tolerant to photoinhibition, while isolated PSII complex contains less PsbK and Ycf12 than wild-type and also has reduced oxygen-evolving capacity.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002177331 – 62Photosystem II reaction center protein ZAdd BLAST62

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-formylmethionine2 Publications1

Keywords - PTMi

Formylation

Interactioni

Subunit structurei

Cyanobacterial PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, 3 peripheral proteins PsbO, PsbU, PsbV and a large number of cofactors. It forms dimeric complexes.11 Publications

Protein-protein interaction databases

DIPiDIP-48504N.
STRINGi197221.tsr1967.

Structurei

Secondary structure

162
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi2 – 27Combined sources26
Beta strandi30 – 32Combined sources3
Turni34 – 36Combined sources3
Helixi37 – 57Combined sources21
Turni58 – 61Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1S5LX-ray3.50Z/z1-62[»]
2AXTX-ray3.00Z/z1-62[»]
3KZIX-ray3.60Z1-62[»]
4FBYX-ray6.56Z/l1-62[»]
4IXQX-ray5.70Z/z1-62[»]
4IXRX-ray5.90Z/z1-62[»]
4PBUX-ray5.00Z/z1-62[»]
4PJ0X-ray2.44Z/z1-62[»]
4RVYX-ray5.50Z/z1-62[»]
4TNHX-ray4.90Z/z1-62[»]
4TNIX-ray4.60Z/z1-62[»]
4TNJX-ray4.50Z/z1-62[»]
4TNKX-ray5.20Z/z1-62[»]
4V62X-ray2.90AZ/BZ1-62[»]
4V82X-ray3.20AZ/BZ1-62[»]
5E7CX-ray4.50Z/z1-62[»]
ProteinModelPortaliQ8DHJ2.
SMRiQ8DHJ2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8DHJ2.

Family & Domainsi

Sequence similaritiesi

Belongs to the PsbZ family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105ZDH. Bacteria.
ENOG4112722. LUCA.
HOGENOMiHOG000264225.
KOiK02724.
OMAiMTIIFQF.
OrthoDBiPOG091H14QX.

Family and domain databases

Gene3Di1.10.287.740. 1 hit.
HAMAPiMF_00644. PSII_PsbZ. 1 hit.
InterProiIPR002644. PSII_PsbZ.
[Graphical view]
PfamiPF01737. Ycf9. 1 hit.
[Graphical view]
ProDomiPD004770. PSII_PsbZ. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR03043. PS_II_psbZ. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8DHJ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTILFQLALA ALVILSFVMV IGVPVAYASP QDWDRSKQLI FLGSGLWIAL
60
VLVVGVLNFF VV
Length:62
Mass (Da):6,764
Last modified:March 1, 2003 - v1
Checksum:i313A629F73715DD8
GO

Mass spectrometryi

Molecular mass is 6798±5 Da from positions 1 - 62. Determined by MALDI. 1 Publication
Molecular mass is 6793 Da from positions 1 - 62. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000039 Genomic DNA. Translation: BAC09519.1.
RefSeqiNP_682757.1. NC_004113.1.
WP_011057802.1. NC_004113.1.

Genome annotation databases

EnsemblBacteriaiBAC09519; BAC09519; BAC09519.
GeneIDi1010256.
KEGGitel:tsr1967.
PATRICi23929338. VBITheElo119873_2057.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000039 Genomic DNA. Translation: BAC09519.1.
RefSeqiNP_682757.1. NC_004113.1.
WP_011057802.1. NC_004113.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1S5LX-ray3.50Z/z1-62[»]
2AXTX-ray3.00Z/z1-62[»]
3KZIX-ray3.60Z1-62[»]
4FBYX-ray6.56Z/l1-62[»]
4IXQX-ray5.70Z/z1-62[»]
4IXRX-ray5.90Z/z1-62[»]
4PBUX-ray5.00Z/z1-62[»]
4PJ0X-ray2.44Z/z1-62[»]
4RVYX-ray5.50Z/z1-62[»]
4TNHX-ray4.90Z/z1-62[»]
4TNIX-ray4.60Z/z1-62[»]
4TNJX-ray4.50Z/z1-62[»]
4TNKX-ray5.20Z/z1-62[»]
4V62X-ray2.90AZ/BZ1-62[»]
4V82X-ray3.20AZ/BZ1-62[»]
5E7CX-ray4.50Z/z1-62[»]
ProteinModelPortaliQ8DHJ2.
SMRiQ8DHJ2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-48504N.
STRINGi197221.tsr1967.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC09519; BAC09519; BAC09519.
GeneIDi1010256.
KEGGitel:tsr1967.
PATRICi23929338. VBITheElo119873_2057.

Phylogenomic databases

eggNOGiENOG4105ZDH. Bacteria.
ENOG4112722. LUCA.
HOGENOMiHOG000264225.
KOiK02724.
OMAiMTIIFQF.
OrthoDBiPOG091H14QX.

Miscellaneous databases

EvolutionaryTraceiQ8DHJ2.

Family and domain databases

Gene3Di1.10.287.740. 1 hit.
HAMAPiMF_00644. PSII_PsbZ. 1 hit.
InterProiIPR002644. PSII_PsbZ.
[Graphical view]
PfamiPF01737. Ycf9. 1 hit.
[Graphical view]
ProDomiPD004770. PSII_PsbZ. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR03043. PS_II_psbZ. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiPSBZ_THEEB
AccessioniPrimary (citable) accession number: Q8DHJ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2003
Last sequence update: March 1, 2003
Last modified: November 30, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.