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Protein

5'-deoxynucleotidase VV1_0013

Gene

VV1_0013

Organism
Vibrio vulnificus (strain CMCP6)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Catalyzes the strictly specific dephosphorylation of 2'-deoxyribonucleoside 5'-monophosphates.UniRule annotation

Catalytic activityi

A 2'-deoxyribonucleoside 5'-monophosphate + H2O = a 2'-deoxyribonucleoside + phosphate.UniRule annotation

Cofactori

a divalent metal cationUniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi53 – 531Divalent metal cation; via tele nitrogenUniRule annotation
Metal bindingi122 – 1221Divalent metal cationUniRule annotation
Binding sitei122 – 1221SubstrateUniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Ligandi

Metal-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciVVUL216895:GIYM-12-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
5'-deoxynucleotidase VV1_0013UniRule annotation (EC:3.1.3.89UniRule annotation)
Alternative name(s):
5'-deoxyribonucleotidaseUniRule annotation
Nucleoside 5'-monophosphate phosphohydrolaseUniRule annotation
Gene namesi
Ordered Locus Names:VV1_0013
OrganismiVibrio vulnificus (strain CMCP6)
Taxonomic identifieri216895 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 1791795'-deoxynucleotidase VV1_0013PRO_0000095063Add
BLAST

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi216895.VV1_0013.

Structurei

3D structure databases

ProteinModelPortaliQ8DG35.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni62 – 654Substrate bindingUniRule annotation

Sequence similaritiesi

Belongs to the 5DNU family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DK2. Bacteria.
COG1896. LUCA.
HOGENOMiHOG000121850.
KOiK08722.
OrthoDBiPOG091H00DC.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
HAMAPiMF_01100. 5DNU. 1 hit.
InterProiIPR006674. HD_domain.
IPR022971. YfbR.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8DG35-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLQTTLKYRN RCNICVREYK CCIGSFMSRF GLSNMALTHY LTSIIHSFTS
60 70 80 90 100
LAHQMLKRTN QDLPTPVKYY NPEIAKEYKK IEAAAEQKLL SMLPEEFQED
110 120 130 140 150
FRPFVISQQT SEEEAQIVKQ ADSICAYLKC LEELSAGNHE FALAKKRLDI
160 170
TLAERKTPEM DYFLNTFAPS FELSLDEIS
Length:179
Mass (Da):20,714
Last modified:July 27, 2011 - v2
Checksum:i98DDA302B31DEE7E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016795 Genomic DNA. Translation: AAO08557.2.

Genome annotation databases

EnsemblBacteriaiAAO08557; AAO08557; VV1_0013.
KEGGivvu:VV1_0013.
PATRICi20156837. VBIVibVul94426_0014.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016795 Genomic DNA. Translation: AAO08557.2.

3D structure databases

ProteinModelPortaliQ8DG35.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi216895.VV1_0013.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO08557; AAO08557; VV1_0013.
KEGGivvu:VV1_0013.
PATRICi20156837. VBIVibVul94426_0014.

Phylogenomic databases

eggNOGiENOG4105DK2. Bacteria.
COG1896. LUCA.
HOGENOMiHOG000121850.
KOiK08722.
OrthoDBiPOG091H00DC.

Enzyme and pathway databases

BioCyciVVUL216895:GIYM-12-MONOMER.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
HAMAPiMF_01100. 5DNU. 1 hit.
InterProiIPR006674. HD_domain.
IPR022971. YfbR.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry namei5DNU_VIBVU
AccessioniPrimary (citable) accession number: Q8DG35
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 24, 2004
Last sequence update: July 27, 2011
Last modified: September 7, 2016
This is version 69 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.