Reviewed,
UniProtKB/Swiss-Prot Q8DCX0 (SYK3_VIBVU)
Last modified
November 3, 2009.
Version 35.
History...
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: Putative lysyl-tRNA synthetase EC=6.1.1.6 Alternative name(s): Lysine--tRNA ligase Short name=LysRS GX | ||||
| Gene names |
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| Organism | Vibrio vulnificus [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 672 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio |
Protein attributes
| Sequence length | 323 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Function | Could be a lysyl-tRNA synthetase. HAMAP MF_00174 |
| Catalytic activity | ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). HAMAP MF_00174 |
| Sequence similarities | Belongs to the class-II aminoacyl-tRNA synthetase family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Protein biosynthesis |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Aminoacyl-tRNA synthetase Ligase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | lysyl-tRNA aminoacylation Inferred from electronic annotation. Source: HAMAP |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: InterPro |
| Molecular function | ATP binding Inferred from electronic annotation. Source: HAMAP lysine-tRNA ligase activityInferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||
Molecule processing | |||||||
|---|---|---|---|---|---|---|---|
| Chain | 1 – 323 | 323 | Putative lysyl-tRNA synthetase HAMAP MF_00174 | PRO_0000152732 | |||
Sequences
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References
Cross-references
Sequence databases | |
|---|---|
| AE016795 Genomic DNA. Translation: AAO09726.1. | |
| RefSeq | NP_760199.1. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1E1O based on UniProtKB P14825. |
| ModBase | Search... |
Genome annotation databases | |
| GeneID | 1178189. |
| GenomeReviews | Gene locus VV1_1270 in contig AE016795_GR. |
| KEGG | vvu:VV1_1270. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| HOGENOM | Q8DCX0. |
| OMA | VFRNEEA. |
Enzyme and pathway databases | |
| BioCyc | VVUL216895:VV1_1270-MON. |
| BRENDA | 6.1.1.6. 277169. |
Family and domain databases | |
| HAMAP | MF_00174. [Tree] |
| InterPro | IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II_cons-reg. IPR004525. Lys-tRNA-synth-rel. IPR018149. Lys-tRNA-synth_II_C. [Graphical view] |
| PANTHER | PTHR22594. aa-tRNA-synt_II. 1 hit. |
| Pfam | PF00152. tRNA-synt_2. 1 hit. [Graphical view] |
| PRINTS | PR00982. TRNASYNTHLYS. |
| TIGRFAMs | TIGR00462. genX. 1 hit. |
| PROSITE | PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | SYK3_VIBVU | ||||||||
| Accession | Primary (citable) accession number: Q8DCX0 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
Relevant documents
| Aminoacyl-tRNA synthetases List of aminoacyl-tRNA synthetase entries |
| SIMILARITY comments Index of protein domains and families |

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