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Q8DBS9 (DEOD1_VIBVU) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Purine nucleoside phosphorylase DeoD-type 1

Short name=PNP 1
EC=2.4.2.1
Gene names
Name:deoD1
Ordered Locus Names:VV1_1728
OrganismVibrio vulnificus (strain CMCP6) [Complete proteome] [HAMAP]
Taxonomic identifier216895 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length239 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Subunit structure

Homohexamer By similarity. HAMAP-Rule MF_01627

Sequence similarities

Belongs to the PNP/UDP phosphorylase family.

Ontologies

Keywords
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpurine nucleoside metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionpurine-nucleoside phosphorylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 239239Purine nucleoside phosphorylase DeoD-type 1 HAMAP-Rule MF_01627
PRO_0000063176

Sequences

Sequence LengthMass (Da)Tools
Q8DBS9 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: 156CCC732B236B05

FASTA23925,885
        10         20         30         40         50         60 
MATPHINAEM GDFADVVLMP GDPLRAKYIA ETFLEDVVQV CDVRNMYGFT GTYKGRKVSV 

        70         80         90        100        110        120 
MGHGMGIPSC SIYATELIKD YGVKKIIRVG SCGAVSTDIK VRDVVIGMGA CTDSKVNRIR 

       130        140        150        160        170        180 
FKGHDFAAIA DYKMVKAAEE AAKARGIDVK VGNLFSAELF YTPDPEMFDV MDKYGIVGVE 

       190        200        210        220        230 
MEAAGIYGVA AEYGAKALTI CTVSDHIKTG EQTTSEERQN TFNDMMIVAL DSVLLGDAE 

« Hide

References

[1]"Complete genome sequence of Vibrio vulnificus CMCP6."
Rhee J.H., Kim S.Y., Chung S.S., Kim J.J., Moon Y.H., Jeong H., Choy H.E.
Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CMCP6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE016795 Genomic DNA. Translation: AAO10143.1.
RefSeqNP_760616.1. NC_004459.3.

3D structure databases

ProteinModelPortalQ8DBS9.
SMRQ8DBS9. Positions 2-237.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING216895.VV1_1728.

Proteomic databases

PRIDEQ8DBS9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAO10143; AAO10143; VV1_1728.
GeneID1178642.
KEGGvvu:VV1_1728.
PATRIC20160249. VBIVibVul94426_1606.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0813.
HOGENOMHOG000274896.
KOK03784.
OMARQTTFSE.
OrthoDBEOG6BKJC5.

Enzyme and pathway databases

BioCycVVUL216895:GIYM-1527-MONOMER.

Family and domain databases

Gene3D3.40.50.1580. 1 hit.
HAMAPMF_01627. Pur_nucleosid_phosp.
InterProIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERPTHR21234. PTHR21234. 1 hit.
PfamPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMSSF53167. SSF53167. 1 hit.
TIGRFAMsTIGR00107. deoD. 1 hit.
PROSITEPS01232. PNP_UDP_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDEOD1_VIBVU
AccessionPrimary (citable) accession number: Q8DBS9
Entry history
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: March 1, 2003
Last modified: May 14, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families