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Q8DBS9

- DEOD1_VIBVU

UniProt

Q8DBS9 - DEOD1_VIBVU

Protein

Purine nucleoside phosphorylase DeoD-type 1

Gene

deoD1

Organism
Vibrio vulnificus (strain CMCP6)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (01 Mar 2003)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
    Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. purine nucleoside metabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Enzyme and pathway databases

    BioCyciVVUL216895:GIYM-1527-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purine nucleoside phosphorylase DeoD-type 1UniRule annotation (EC:2.4.2.1UniRule annotation)
    Short name:
    PNP 1UniRule annotation
    Gene namesi
    Name:deoD1UniRule annotation
    Ordered Locus Names:VV1_1728
    OrganismiVibrio vulnificus (strain CMCP6)
    Taxonomic identifieri216895 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000002275: Chromosome 1

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 239239Purine nucleoside phosphorylase DeoD-type 1PRO_0000063176Add
    BLAST

    Proteomic databases

    PRIDEiQ8DBS9.

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Protein-protein interaction databases

    STRINGi216895.VV1_1728.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8DBS9.
    SMRiQ8DBS9. Positions 2-237.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PNP/UDP phosphorylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0813.
    HOGENOMiHOG000274896.
    KOiK03784.
    OMAiRQTTFSE.
    OrthoDBiEOG6BKJC5.

    Family and domain databases

    Gene3Di3.40.50.1580. 1 hit.
    HAMAPiMF_01627. Pur_nucleosid_phosp.
    InterProiIPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view]
    PANTHERiPTHR21234. PTHR21234. 1 hit.
    PfamiPF01048. PNP_UDP_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53167. SSF53167. 1 hit.
    TIGRFAMsiTIGR00107. deoD. 1 hit.
    PROSITEiPS01232. PNP_UDP_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8DBS9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATPHINAEM GDFADVVLMP GDPLRAKYIA ETFLEDVVQV CDVRNMYGFT    50
    GTYKGRKVSV MGHGMGIPSC SIYATELIKD YGVKKIIRVG SCGAVSTDIK 100
    VRDVVIGMGA CTDSKVNRIR FKGHDFAAIA DYKMVKAAEE AAKARGIDVK 150
    VGNLFSAELF YTPDPEMFDV MDKYGIVGVE MEAAGIYGVA AEYGAKALTI 200
    CTVSDHIKTG EQTTSEERQN TFNDMMIVAL DSVLLGDAE 239
    Length:239
    Mass (Da):25,885
    Last modified:March 1, 2003 - v1
    Checksum:i156CCC732B236B05
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016795 Genomic DNA. Translation: AAO10143.1.
    RefSeqiNP_760616.1. NC_004459.3.
    WP_011079645.1. NC_004459.3.

    Genome annotation databases

    EnsemblBacteriaiAAO10143; AAO10143; VV1_1728.
    GeneIDi1178642.
    KEGGivvu:VV1_1728.
    PATRICi20160249. VBIVibVul94426_1606.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016795 Genomic DNA. Translation: AAO10143.1 .
    RefSeqi NP_760616.1. NC_004459.3.
    WP_011079645.1. NC_004459.3.

    3D structure databases

    ProteinModelPortali Q8DBS9.
    SMRi Q8DBS9. Positions 2-237.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 216895.VV1_1728.

    Proteomic databases

    PRIDEi Q8DBS9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAO10143 ; AAO10143 ; VV1_1728 .
    GeneIDi 1178642.
    KEGGi vvu:VV1_1728.
    PATRICi 20160249. VBIVibVul94426_1606.

    Phylogenomic databases

    eggNOGi COG0813.
    HOGENOMi HOG000274896.
    KOi K03784.
    OMAi RQTTFSE.
    OrthoDBi EOG6BKJC5.

    Enzyme and pathway databases

    BioCyci VVUL216895:GIYM-1527-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.1580. 1 hit.
    HAMAPi MF_01627. Pur_nucleosid_phosp.
    InterProi IPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view ]
    PANTHERi PTHR21234. PTHR21234. 1 hit.
    Pfami PF01048. PNP_UDP_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53167. SSF53167. 1 hit.
    TIGRFAMsi TIGR00107. deoD. 1 hit.
    PROSITEi PS01232. PNP_UDP_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Vibrio vulnificus CMCP6."
      Rhee J.H., Kim S.Y., Chung S.S., Kim J.J., Moon Y.H., Jeong H., Choy H.E.
      Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CMCP6.

    Entry informationi

    Entry nameiDEOD1_VIBVU
    AccessioniPrimary (citable) accession number: Q8DBS9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 10, 2006
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3