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Q8D3Z2 (DEOD2_VIBVU) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Purine nucleoside phosphorylase DeoD-type 2

Short name=PNP 2
EC=2.4.2.1
Gene names
Name:deoD2
Ordered Locus Names:VV2_1540
OrganismVibrio vulnificus (strain CMCP6) [Complete proteome] [HAMAP]
Taxonomic identifier216895 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length236 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Subunit structure

Homohexamer By similarity. HAMAP-Rule MF_01627

Sequence similarities

Belongs to the PNP/UDP phosphorylase family.

Ontologies

Keywords
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpurine nucleoside metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionpurine-nucleoside phosphorylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 236236Purine nucleoside phosphorylase DeoD-type 2 HAMAP-Rule MF_01627
PRO_0000063177

Sequences

Sequence LengthMass (Da)Tools
Q8D3Z2 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: 50AA3F3DE816C2E3

FASTA23625,668
        10         20         30         40         50         60 
MATPHINAQP GDFAETVLMP GDPLRAKYIA ETFLEDVKQV CDVRNMFGFT GTYKGKKVSV 

        70         80         90        100        110        120 
MGHGMGIPSA CIYVHELIAE YGVKNVIRVG SCGAVRDDVN LMDVVIGMGA STDSKVNRIR 

       130        140        150        160        170        180 
FNDHDFAALA DYGLLEEAVK QARAQNVPVK VGNVFSADLF YTPEADIFEK MEKLGILGVD 

       190        200        210        220        230 
MEAAGIYGVA ADLKAKALTI LTVSDHIIRG EKLSSEDRQK SFNDMMKVAL ETAINL 

« Hide

References

[1]"Complete genome sequence of Vibrio vulnificus CMCP6."
Rhee J.H., Kim S.Y., Chung S.S., Kim J.J., Moon Y.H., Jeong H., Choy H.E.
Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CMCP6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE016796 Genomic DNA. Translation: AAO08404.1.
RefSeqNP_763414.1. NC_004460.2.

3D structure databases

ProteinModelPortalQ8D3Z2.
SMRQ8D3Z2. Positions 2-234.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING216895.VV2_1540.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAO08404; AAO08404; VV2_1540.
GeneID1181465.
KEGGvvu:VV2_1540.
PATRIC20166426. VBIVibVul94426_4662.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0813.
HOGENOMHOG000274896.
KOK03784.
OMAHELISEF.
OrthoDBEOG6BKJC5.

Enzyme and pathway databases

BioCycVVUL216895:GIYM-4296-MONOMER.

Family and domain databases

Gene3D3.40.50.1580. 1 hit.
HAMAPMF_01627. Pur_nucleosid_phosp.
InterProIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERPTHR21234. PTHR21234. 1 hit.
PfamPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMSSF53167. SSF53167. 1 hit.
TIGRFAMsTIGR00107. deoD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDEOD2_VIBVU
AccessionPrimary (citable) accession number: Q8D3Z2
Entry history
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: March 1, 2003
Last modified: May 14, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families