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Q8D0M2 (Q8D0M2_YERPE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 85. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Superoxide dismutase RuleBase RU000414

EC=1.15.1.1 RuleBase RU000414
Gene names
Name:sodB EMBL AAM85517.1
Ordered Locus Names:y1951 EMBL AAM85517.1, YP_2172 EMBL AAS62380.1
OrganismYersinia pestis [Complete proteome] [HAMAP]
Taxonomic identifier632 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000414

Catalytic activity

2 superoxide + 2 H+ = O2 + H2O2. RuleBase RU000414

Sequence similarities

Belongs to the iron/manganese superoxide dismutase family. RuleBase RU004477

Ontologies

Keywords
   Molecular functionOxidoreductase RuleBase RU000414
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processsuperoxide metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: InterPro

superoxide dismutase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q8D0M2 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: A9377B882D30E0FE

FASTA20623,179
        10         20         30         40         50         60 
MKSKHPEHPR KERAMSFELP ALPYAQNALE PHISAETLEY HYGKHHNTYV INLNNLIKDT 

        70         80         90        100        110        120 
EFAGKSLEEI VKTANGGVFN NAAQVWNHTF YWHCLSPNGG GEPTGKIAEA INKSFGSFAE 

       130        140        150        160        170        180 
FKAQFTDAAV KNFGAGWTWL VKKADGTLAI VSTSNAGTPL TTTDKPLLTV DVWEHAYYID 

       190        200 
YRNARPKYLE NFWAVVNWSF AEKNLD 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of Yersinia pestis KIM."
Deng W., Burland V., Plunkett G. III, Boutin A., Mayhew G.F., Liss P., Perna N.T., Rose D.J., Mau B., Zhou S., Schwartz D.C., Fetherston J.D., Lindler L.E., Brubaker R.R., Plano G.V., Straley S.C., McDonough K.A., Nilles M.L. expand/collapse author list , Matson J.S., Blattner F.R., Perry R.D.
J. Bacteriol. 184:4601-4611(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KIM EMBL AAM85517.1 and KIM10+ / Biovar Mediaevalis.
[2]"Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans."
Song Y., Tong Z., Wang J., Wang L., Guo Z., Han Y., Zhang J., Pei D., Zhou D., Qin H., Pang X., Han Y., Zhai J., Li M., Cui B., Qi Z., Jin L., Dai R. expand/collapse author list , Chen F., Li S., Ye C., Du Z., Lin W., Wang J., Yu J., Yang H., Wang J., Huang P., Yang R.
DNA Res. 11:179-197(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 91001 EMBL AAS62380.1 and 91001 / Biovar Mediaevalis.
[3]"Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus."
Zhou D., Tong Z., Song Y., Han Y., Pei D., Pang X., Zhai J., Li M., Cui B., Qi Z., Jin L., Dai R., Du Z., Wang J., Guo Z., Wang J., Huang P., Yang R.
J. Bacteriol. 186:5147-5152(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 91001 EMBL AAS62380.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE009952 Genomic DNA. Translation: AAM85517.1.
AE017042 Genomic DNA. Translation: AAS62380.1.
RefSeqNP_669266.1. NC_004088.1.
NP_993503.1. NC_005810.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING187410.y1951.

Protocols and materials databases

DNASU1146898.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAM85517; AAM85517; y1951.
AAS62380; AAS62380; YP_2172.
GeneID1146898.
2765100.
KEGGypk:y1951.
ypm:YP_2172.
PATRIC18623096. VBIYerPes99487_2482.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000013584.
KOK04564.
OrthoDBEOG63NMNT.
ProtClustDBPRK10543.

Family and domain databases

InterProIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERPTHR11404. PTHR11404. 1 hit.
PfamPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFPIRSF000349. SODismutase. 1 hit.
PRINTSPR01703. MNSODISMTASE.
SUPFAMSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ8D0M2_YERPE
AccessionPrimary (citable) accession number: Q8D0M2
Secondary accession number(s): Q74TI5
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: April 16, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)