ID CROCC_MOUSE Reviewed; 2009 AA. AC Q8CJ40; A2AA81; Q7TQL2; Q80U01; Q8R0B9; DT 13-JUN-2006, integrated into UniProtKB/Swiss-Prot. DT 27-JUL-2011, sequence version 2. DT 27-MAR-2024, entry version 135. DE RecName: Full=Rootletin; DE AltName: Full=Ciliary rootlet coiled-coil protein; GN Name=Crocc {ECO:0000312|MGI:MGI:3529431}; GN Synonyms=Kiaa0445 {ECO:0000312|EMBL:BAC65567.3}; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] {ECO:0000305, ECO:0000312|EMBL:AAN73044.1} RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, SUBUNIT, SUBCELLULAR RP LOCATION, TISSUE SPECIFICITY, AND INTERACTION WITH KLC3. RC STRAIN=C57BL/6J {ECO:0000312|EMBL:AAN73044.1}; RX PubMed=12427867; DOI=10.1083/jcb.200207153; RA Yang J., Liu X., Yue G., Adamian M., Bulgakov O., Li T.; RT "Rootletin, a novel coiled-coil protein, is a structural component of the RT ciliary rootlet."; RL J. Cell Biol. 159:431-440(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=C57BL/6J; RX PubMed=19468303; DOI=10.1371/journal.pbio.1000112; RA Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., RA Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., RA Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S., RA Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., RA Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., RA Eichler E.E., Ponting C.P.; RT "Lineage-specific biology revealed by a finished genome assembly of the RT mouse."; RL PLoS Biol. 7:E1000112-E1000112(2009). RN [3] {ECO:0000305, ECO:0000312|EMBL:AAH54054.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=C57BL/6J {ECO:0000312|EMBL:AAH27090.1}, and FVB/N RC {ECO:0000312|EMBL:AAH54054.1}; RC TISSUE=Colon {ECO:0000312|EMBL:AAH54054.1}, and Retina RC {ECO:0000312|EMBL:AAH27090.1}; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] {ECO:0000305, ECO:0000312|EMBL:BAC65567.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 391-2009 (ISOFORM 3). RC TISSUE=Brain {ECO:0000312|EMBL:BAC65567.3}; RX PubMed=12693553; DOI=10.1093/dnares/10.1.35; RA Okazaki N., Kikuno R., Ohara R., Inamoto S., Aizawa H., Yuasa S., RA Nakajima D., Nagase T., Ohara O., Koga H.; RT "Prediction of the coding sequences of mouse homologues of KIAA gene: II. RT The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs RT identified by screening of terminal sequences of cDNA clones randomly RT sampled from size-fractionated libraries."; RL DNA Res. 10:35-48(2003). RN [5] RP PROTEIN SEQUENCE OF 1261-1274, AND IDENTIFICATION BY MASS SPECTROMETRY. RC STRAIN=OF1; TISSUE=Hippocampus; RA Lubec G., Sunyer B., Chen W.-Q.; RL Submitted (JAN-2009) to UniProtKB. RN [6] {ECO:0000305} RP DISRUPTION PHENOTYPE. RX PubMed=15870283; DOI=10.1128/mcb.25.10.4129-4137.2005; RA Yang J., Gao J., Adamian M., Wen X.-H., Pawlyk B., Zhang L., RA Sanderson M.J., Zuo J., Makino C.L., Li T.; RT "The ciliary rootlet maintains long-term stability of sensory cilia."; RL Mol. Cell. Biol. 25:4129-4137(2005). RN [7] {ECO:0000305} RP SUBCELLULAR LOCATION, AND INTERACTION WITH CEP250. RX PubMed=16339073; DOI=10.1091/mbc.e05-10-0943; RA Yang J., Adamian M., Li T.; RT "Rootletin interacts with C-Nap1 and may function as a physical linker RT between the pair of centrioles/basal bodies in cells."; RL Mol. Biol. Cell 17:1033-1040(2006). RN [8] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1463; SER-1469; TYR-1475; RP SER-1476; SER-1479; SER-1483; SER-1489 AND SER-1568, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Brain, Kidney, Lung, Spleen, and Testis; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). CC -!- FUNCTION: Major structural component of the ciliary rootlet, a CC cytoskeletal-like structure in ciliated cells which originates from the CC basal body at the proximal end of a cilium and extends proximally CC toward the cell nucleus (PubMed:12427867). Furthermore, is required for CC the correct positioning of the cilium basal body relative to the cell CC nucleus, to allow for ciliogenesis (By similarity). Contributes to CC centrosome cohesion before mitosis (By similarity). CC {ECO:0000250|UniProtKB:Q5TZA2, ECO:0000269|PubMed:12427867}. CC -!- SUBUNIT: Homomer. Interacts with KLC3, NEK2 and the N-terminus of CC CEP250 (PubMed:12427867, PubMed:16339073). Interacts with CEP44 (By CC similarity). {ECO:0000250|UniProtKB:Q5TZA2, CC ECO:0000269|PubMed:12427867, ECO:0000269|PubMed:16339073}. CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, microtubule organizing CC center, centrosome, centriole {ECO:0000269|PubMed:12427867, CC ECO:0000269|PubMed:16339073}. Cytoplasm, cytoskeleton, cilium basal CC body {ECO:0000250|UniProtKB:Q5TZA2}. Cytoplasm, cytoskeleton, CC microtubule organizing center, centrosome CC {ECO:0000250|UniProtKB:Q5TZA2}. Note=In ciliated cells, associated with CC ciliary rootlets. In non-ciliated cells, localized between, around and CC at the proximal ends of the centrioles. Dissociates from the centrioles CC at the onset of mitosis and reassociates with them at anaphase. CC {ECO:0000269|PubMed:12427867, ECO:0000269|PubMed:16339073}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1 {ECO:0000269|PubMed:12427867}; CC IsoId=Q8CJ40-1; Sequence=Displayed; CC Name=2 {ECO:0000269|PubMed:15489334}; CC IsoId=Q8CJ40-2; Sequence=VSP_052066, VSP_052067; CC Name=3 {ECO:0000269|PubMed:12693553}; CC IsoId=Q8CJ40-3; Sequence=VSP_052068; CC -!- TISSUE SPECIFICITY: Highest expression detected in photoreceptor cells CC of retina. Expressed at lower levels in brain, trachea and kidney. CC Detected in all major ciliated epithelia. During embryonic development, CC enriched along the apical domains of neuroepithelium in brain CC ventricular zone, in primordia of retinal pigment epithelia and in CC neural retina. {ECO:0000269|PubMed:12427867}. CC -!- PTM: Phosphorylated by NEK2 which may regulate its association with CC centrosomes. CC -!- DISRUPTION PHENOTYPE: Mice have no ciliary rootlets in ciliated cells. CC {ECO:0000269|PubMed:15870283}. CC -!- SIMILARITY: Belongs to the rootletin family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAH27090.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF527975; AAN73044.1; -; mRNA. DR EMBL; AL645625; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC027090; AAH27090.1; ALT_INIT; mRNA. DR EMBL; BC054054; AAH54054.1; -; mRNA. DR EMBL; AK122285; BAC65567.3; -; Transcribed_RNA. DR CCDS; CCDS18861.1; -. [Q8CJ40-1] DR CCDS; CCDS51346.1; -. [Q8CJ40-2] DR RefSeq; NP_001139430.1; NM_001145958.1. [Q8CJ40-2] DR RefSeq; NP_742120.2; NM_172122.2. [Q8CJ40-1] DR AlphaFoldDB; Q8CJ40; -. DR SMR; Q8CJ40; -. DR BioGRID; 231046; 14. DR IntAct; Q8CJ40; 6. DR STRING; 10090.ENSMUSP00000099549; -. DR iPTMnet; Q8CJ40; -. DR PhosphoSitePlus; Q8CJ40; -. DR EPD; Q8CJ40; -. DR jPOST; Q8CJ40; -. DR MaxQB; Q8CJ40; -. DR PaxDb; 10090-ENSMUSP00000099549; -. DR PeptideAtlas; Q8CJ40; -. DR ProteomicsDB; 277898; -. [Q8CJ40-1] DR ProteomicsDB; 277899; -. [Q8CJ40-2] DR ProteomicsDB; 277900; -. [Q8CJ40-3] DR Pumba; Q8CJ40; -. DR Antibodypedia; 14565; 48 antibodies from 15 providers. DR Ensembl; ENSMUST00000040222.14; ENSMUSP00000037679.8; ENSMUSG00000040860.17. [Q8CJ40-2] DR Ensembl; ENSMUST00000097816.9; ENSMUSP00000095425.3; ENSMUSG00000040860.17. [Q8CJ40-2] DR Ensembl; ENSMUST00000102491.10; ENSMUSP00000099549.4; ENSMUSG00000040860.17. [Q8CJ40-1] DR Ensembl; ENSMUST00000168157.8; ENSMUSP00000126543.2; ENSMUSG00000040860.17. [Q8CJ40-2] DR GeneID; 230872; -. DR KEGG; mmu:230872; -. DR UCSC; uc008vns.2; mouse. [Q8CJ40-1] DR UCSC; uc012dnz.1; mouse. [Q8CJ40-2] DR AGR; MGI:3529431; -. DR CTD; 9696; -. DR MGI; MGI:3529431; Crocc. DR VEuPathDB; HostDB:ENSMUSG00000040860; -. DR eggNOG; ENOG502QQF0; Eukaryota. DR GeneTree; ENSGT00940000155758; -. DR HOGENOM; CLU_000920_1_0_1; -. DR InParanoid; Q8CJ40; -. DR OMA; DPAQDCQ; -. DR OrthoDB; 2996539at2759; -. DR PhylomeDB; Q8CJ40; -. DR TreeFam; TF101138; -. DR BioGRID-ORCS; 230872; 6 hits in 78 CRISPR screens. DR ChiTaRS; Crocc; mouse. DR PRO; PR:Q8CJ40; -. DR Proteomes; UP000000589; Chromosome 4. DR RNAct; Q8CJ40; Protein. DR Bgee; ENSMUSG00000040860; Expressed in retinal neural layer and 175 other cell types or tissues. DR ExpressionAtlas; Q8CJ40; baseline and differential. DR GO; GO:0097729; C:9+2 motile cilium; IDA:MGI. DR GO; GO:0015629; C:actin cytoskeleton; ISO:MGI. DR GO; GO:0005814; C:centriole; IDA:UniProtKB. DR GO; GO:0005813; C:centrosome; ISS:UniProtKB. DR GO; GO:0035253; C:ciliary rootlet; IDA:MGI. DR GO; GO:0005829; C:cytosol; ISO:MGI. DR GO; GO:0001917; C:photoreceptor inner segment; IDA:MGI. DR GO; GO:0005886; C:plasma membrane; ISO:MGI. DR GO; GO:0120219; C:subapical part of cell; IDA:MGI. DR GO; GO:0003779; F:actin binding; IDA:MGI. DR GO; GO:0019894; F:kinesin binding; IPI:MGI. DR GO; GO:0005200; F:structural constituent of cytoskeleton; IMP:MGI. DR GO; GO:0005198; F:structural molecule activity; IDA:UniProtKB. DR GO; GO:0019725; P:cellular homeostasis; IMP:MGI. DR GO; GO:0010457; P:centriole-centriole cohesion; ISO:MGI. DR GO; GO:0007098; P:centrosome cycle; ISS:UniProtKB. DR GO; GO:0032053; P:ciliary basal body organization; IMP:MGI. DR GO; GO:0010669; P:epithelial structure maintenance; IMP:MGI. DR GO; GO:0051649; P:establishment of localization in cell; IMP:MGI. DR GO; GO:0051656; P:establishment of organelle localization; IMP:MGI. DR GO; GO:0045494; P:photoreceptor cell maintenance; IMP:MGI. DR GO; GO:0045724; P:positive regulation of cilium assembly; ISO:MGI. DR GO; GO:1903566; P:positive regulation of protein localization to cilium; ISO:MGI. DR GO; GO:0008104; P:protein localization; ISO:MGI. DR GO; GO:0033365; P:protein localization to organelle; ISO:MGI. DR Gene3D; 1.10.287.1490; -; 1. DR PANTHER; PTHR23159; CENTROSOMAL PROTEIN 2; 1. DR PANTHER; PTHR23159:SF17; ROOTLETIN; 1. DR Pfam; PF15035; Rootletin; 1. DR SUPFAM; SSF57997; Tropomyosin; 2. DR Genevisible; Q8CJ40; MM. PE 1: Evidence at protein level; KW Alternative splicing; Cell cycle; Cell projection; Cilium; KW Cilium biogenesis/degradation; Coiled coil; Cytoplasm; Cytoskeleton; KW Direct protein sequencing; Phosphoprotein; Reference proteome. FT CHAIN 1..2009 FT /note="Rootletin" FT /id="PRO_0000239944" FT REGION 462..519 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 575..594 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 636..665 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1180..1225 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1448..1501 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1957..2009 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COILED 74..265 FT /evidence="ECO:0000255" FT COILED 346..438 FT /evidence="ECO:0000255" FT COILED 550..1058 FT /evidence="ECO:0000255" FT COILED 1091..1439 FT /evidence="ECO:0000255" FT COILED 1498..1697 FT /evidence="ECO:0000255" FT COILED 1744..1998 FT /evidence="ECO:0000255" FT COMPBIAS 462..497 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1475..1491 FT /note="Pro residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1957..1976 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1977..2003 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 1453 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q5TZA2" FT MOD_RES 1463 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1469 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1475 FT /note="Phosphotyrosine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1476 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1479 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1483 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1489 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1568 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT VAR_SEQ 1..74 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_052066" FT VAR_SEQ 120..209 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_052067" FT VAR_SEQ 1136..1156 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|PubMed:12693553" FT /id="VSP_052068" FT CONFLICT 289 FT /note="T -> A (in Ref. 1; AAN73044 and 3; AAH54054)" FT /evidence="ECO:0000305" FT CONFLICT 360 FT /note="E -> G (in Ref. 3; AAH54054)" FT /evidence="ECO:0000305" FT CONFLICT 811 FT /note="V -> M (in Ref. 3; AAH54054)" FT /evidence="ECO:0000305" FT CONFLICT 1041 FT /note="K -> E (in Ref. 3; AAH54054)" FT /evidence="ECO:0000305" FT CONFLICT 1346 FT /note="L -> V (in Ref. 3; BAC65567)" FT /evidence="ECO:0000305" FT CONFLICT 1864 FT /note="F -> L (in Ref. 3; AAH54054)" FT /evidence="ECO:0000305" SQ SEQUENCE 2009 AA; 226945 MW; 62D942401C1085DA CRC64; MSLGLAGSLQ AQLALEIVIQ SLENCVLGPN QEKSLSVQNR VQDFQGASLL VCAREVIASN LSRPETPAPL QVPEMASLLS LQEENQLLQQ ELSRVEDLLA QSRAERDELA IKYNAVNERL EQAVRLETGE LEAQEPRGLV RQSVELRRQL QEEQSSYRRK LQAYQEGQQR QAQLVQRLQA KILQYKKQCS ELEKQLMDRS TELEQQRLRD TEHSQDLDSA LLRLEEEQQR SASLAQVNAM LREQLDQANL ANQALSEDIR KVTSDWTRSC KELEQREAVW RREEESFNTY FSSEHSRLLR LWRQVMGLRR QASEVKMGTE RDLLQLGGEL VRTSRAVQEL GLGLSASLHR AESKAEAALE KQKLLQAQLE EQLQAKLLRE KDLAQLQVQS DLDKADLSAR VTELALSVEH LQNQNSEKDQ VNRTLSDKLE ALESLRLQEQ TTLDTEDGEG LQQTLRDLAQ AALSDTESGV QLSSSERTAD TSDGSLRGFS GQRTPTPPRH SPGRGRSPRR GLSPACSDSS TLTLIHSALH KRQLQVQDMR GRYEASQELL GSVRKQLSDS EGERRGLEEQ LQRLRDQTAA SAQAQEDAQR EAQRLRSANE LLSREKGNLT HSLQVTQQQA KELRQELEKL QAAQEELKRQ HNQLEDAQED SVQEGARARR ELERSHRQLE QLEVKRSGLT KELVEVREAL SCAILQRDVL QTEKAEVAEA LTKAEAGRAQ LELSLTKLRA EEASLRDSLS KMSALNESLA QDKLELNRLI AQLEEEKVAL LGRQQQAEHA TTMAVEKQEL LEQLRLEQEV ERQGLQGSLC VAEQAREALE QQILVLRSER SHLQEQLAQL SRQLSGRDQE LEQALRESQR QVEALERAAR EKEAMAKERA GLAVKLAAAE REGRTLSEEA IRLRLEKEAL ESSLFDVQRQ LAQLEARREQ LEADSQALLL AKETLTGELA GLRQQVTSTE EKAALDKELM TQKLVQAERE AQASLREQRA AHEEDLQRLQ HEKEAAWREL QAERAQLQGQ LQQEREELLA RMEAEKEELS KEIAALQQER DEGLLLAESE KQQALSLKES EKTALSEKLM GTRHSLAAIS LEMERQKRDA QSRQEQDRNT LNALTSELRD LRAQLEEATA AHAQTVKELE ERTGNLGRQR EACMREAEEL RTQLRVLEDT RDGLRRELLE AQRKGRDSQD SSEAHRQEAS ELRRSLSEGA KEREALRRSN EELRSAVKKA ESERISLKLA NEDKEQKLAL LEEARVSVAK EAGELRASLQ EVERSRLEAR RELQELRRQM KTLDSDNGRL GRELADLQGR LALGERTEKE SRREALGLRQ RLLKGESSLE ALKQELQGSQ RKLQEQEAEF RARERGLLGS LEEARGAEKR LLDSARSLEL RLEAVRAETS ELGLRLSAAE GRAQGLEVEL ARVEAQRRVA EAQLGGLRSA LRRGLGLGRV SSSPAREAPA GGSGDGLSSP SPLEYSPRSQ PPSPGLIASP APPDLDPEAV RDALRDFLQE LRSAQRERDE LKVQTSTLSQ QLVEMEAERD HAASRAKQLQ KAVAESEEAW RSADRRLSGA QAELALQEES VRRSKRECRA TLDQMAVLER SLQATESELR ASQEKVSKMK ATEAKLESDK RRLKEVLDAS ESRSIKLELQ RRALEGELQR SRLGLGDREA HAQALQDRVD SLQRQVADSE VKAGTLQLTV ERLSGALAKV EESEGNLRSK VQSLTDALTQ SSASLSSTQD KNLHLQKALS TCEHDRQVLQ ERLDAARQAL SEARRQSSSL GEQVQTLRGE LASLELQRGD AEGQLQQLQQ ALRQRQEGEA MALRSVQKLQ EERRLLQERL GSLQRALAQL EAEKRDLERS ALQFDKDRVA LRKTLDKVER EKLRSHEDTL RLNAERGRLD RTLTGAELDL AEAQQQIQHL EAQVDVALEG NHNPVQPEAG EQQLELQQEV ERLRSAQVQT ERTLEARERA HRQRVSGLEE QVSTLKAQLH QELRRSSASV SLPPGTPEK //