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Protein
Submitted name:

Protein Yy1

Gene

Yy1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-5689603. UCH proteinases.
R-RNO-5696394. DNA Damage Recognition in GG-NER.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Yy1Imported
Submitted name:
Transcription factor YY1Imported
Gene namesi
Name:Yy1Imported
Synonyms:yy1Imported
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 6

Organism-specific databases

RGDi3982. Yy1.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: RGD
  • Ino80 complex Source: Ensembl
  • nuclear matrix Source: RGD
  • nucleus Source: RGD
  • PcG protein complex Source: Ensembl
  • transcription factor complex Source: RGD

PTM / Processingi

PTM databases

PhosphoSitePlusiQ8CHJ4.

Expressioni

Gene expression databases

BgeeiENSRNOG00000004339.

Interactioni

GO - Molecular functioni

  • histone deacetylase binding Source: RGD

Protein-protein interaction databases

IntActiQ8CHJ4. 2 interactors.
STRINGi10116.ENSRNOP00000005743.

Structurei

3D structure databases

ProteinModelPortaliQ8CHJ4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini293 – 317C2H2-typeInterPro annotationAdd BLAST25
Domaini322 – 349C2H2-typeInterPro annotationAdd BLAST28
Domaini350 – 379C2H2-typeInterPro annotationAdd BLAST30
Domaini380 – 409C2H2-typeInterPro annotationAdd BLAST30

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00760000118771.
HOGENOMiHOG000008232.
HOVERGENiHBG006823.
KOiK09201.
OMAiGGRKWEQ.
OrthoDBiEOG091G03FM.
PhylomeDBiQ8CHJ4.
TreeFamiTF106493.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiView protein in InterPro
IPR017114. TF_Yin_yang.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
PfamiView protein in Pfam
PF00096. zf-C2H2. 1 hit.
PIRSFiPIRSF037113. TF_Yin_yang. 1 hit.
SMARTiView protein in SMART
SM00355. ZnF_C2H2. 4 hits.
PROSITEiView protein in PROSITE
PS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.

Sequencei

Sequence statusi: Complete.

Q8CHJ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASGDTLYIA TDGSEMPAEI VELHEIEVET IPVETIETTV VGEEEDDDED
60 70 80 90 100
DEDGGGGDHG GGGGHGHAGH HHHHHHHHHP PMIALQPLVT DDPTQVHHHQ
110 120 130 140 150
EVILVQTREE VVGGDDSDGL RAEDGFEDQI LIPVPAPAGG DDDYIEQTLV
160 170 180 190 200
TVAAAGKSGG GSSSGGGRVK KGGGKKSGKK SYLGSGAGAA GGGGADPGNK
210 220 230 240 250
KWEQKQVQIK TLEGEFSVTM WSSDEKKDID HETVVEEQII GENSPPDYSE
260 270 280 290 300
YMTGKKLPPG GIPGIDLSDP KQLAEFARMK PRKIKEDDAP RTIACPHKGC
310 320 330 340 350
TKMFRDNSAM RKHLHTHGPR VHVCAECGKA FVESSKLKRH QLVHTGEKPF
360 370 380 390 400
QCTFEGCGKR FSLDFNLRTH VRIHTGDRPY VCPFDGCNKK FAQSTNLKSH
410
ILTHAKAKNN Q
Length:411
Mass (Da):44,417
Last modified:March 1, 2003 - v1
Checksum:i09EDA4A54449FF8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07065506 Genomic DNA. No translation available.
AY442180 Genomic DNA. Translation: AAR14688.1.
AB080317 mRNA. Translation: BAC53761.1.
RefSeqiNP_775412.1. NM_173290.1.
UniGeneiRn.162877.

Genome annotation databases

EnsembliENSRNOT00000005743; ENSRNOP00000005743; ENSRNOG00000004339.
GeneIDi24919.
KEGGirno:24919.
UCSCiRGD:3982. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07065506 Genomic DNA. No translation available.
AY442180 Genomic DNA. Translation: AAR14688.1.
AB080317 mRNA. Translation: BAC53761.1.
RefSeqiNP_775412.1. NM_173290.1.
UniGeneiRn.162877.

3D structure databases

ProteinModelPortaliQ8CHJ4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ8CHJ4. 2 interactors.
STRINGi10116.ENSRNOP00000005743.

PTM databases

PhosphoSitePlusiQ8CHJ4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000005743; ENSRNOP00000005743; ENSRNOG00000004339.
GeneIDi24919.
KEGGirno:24919.
UCSCiRGD:3982. rat.

Organism-specific databases

CTDi7528.
RGDi3982. Yy1.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00760000118771.
HOGENOMiHOG000008232.
HOVERGENiHBG006823.
KOiK09201.
OMAiGGRKWEQ.
OrthoDBiEOG091G03FM.
PhylomeDBiQ8CHJ4.
TreeFamiTF106493.

Enzyme and pathway databases

ReactomeiR-RNO-5689603. UCH proteinases.
R-RNO-5696394. DNA Damage Recognition in GG-NER.

Gene expression databases

BgeeiENSRNOG00000004339.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiView protein in InterPro
IPR017114. TF_Yin_yang.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
PfamiView protein in Pfam
PF00096. zf-C2H2. 1 hit.
PIRSFiPIRSF037113. TF_Yin_yang. 1 hit.
SMARTiView protein in SMART
SM00355. ZnF_C2H2. 4 hits.
PROSITEiView protein in PROSITE
PS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiQ8CHJ4_RAT
AccessioniPrimary (citable) accession number: Q8CHJ4
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: February 15, 2017
This is version 117 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.