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Q8CED7

- Q8CED7_MOUSE

UniProt

Q8CED7 - Q8CED7_MOUSE

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Protein
Submitted name: Putative uncharacterized protein
Gene
Msr1
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. scavenger receptor activity Source: InterPro

GO - Biological processi

  1. lipoprotein transport Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Msr1Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98257. Msr1.

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ8CED7.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00640000091447.
HOVERGENiHBG002473.
KOiK06558.

Family and domain databases

InterProiIPR008160. Collagen.
IPR003543. Macro_scav_rcpt.
[Graphical view]
PfamiPF01391. Collagen. 2 hits.
PF03523. Macscav_rec. 1 hit.
[Graphical view]
PRINTSiPR01408. MACSCAVRCPTR.

Sequencei

Sequence statusi: Complete.

Q8CED7-1 [UniParc]FASTAAdd to Basket

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MTKEMTENQR LCPHEQEDAD CSSESVKFDA RSMTASLPHS TKNGPSLQEK    50
LKSFKAALIA LYLLVFAVLI PVVGIVTAQL LNWEMKNCLV CSLNTSDTSQ 100
GPMEKENTSK VEMRFTIIME HMKDMEERIE SISNSKADLI DTERFQNFSM 150
ATDQRLNDIL LQLNSLISSV QEHGNSLDAI SKSLQSLNMT LLDVQLHTET 200
LNVRVRESTA KQQEDISKLE ERVYKVSAEV QSVKEEQAHV EQEVKQEVRV 250
LNNITNDLRL KDWEHSQTLK NITFIQGPPG PQGEKGDRGL TGQTGPPGAP 300
GIRGIPGVKG DRGQIGFPGG RGNPGAPGKP GRSGSPGPKG QKGEKGSVGG 350
SRSV 354
Length:354
Mass (Da):38,773
Last modified:March 1, 2003 - v1
Checksum:i348E084D2D8B644B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK028480 mRNA. Translation: BAC25973.1.
AK150518 mRNA. Translation: BAE29630.1.
AK151403 mRNA. Translation: BAE30370.1.
AK151855 mRNA. Translation: BAE30744.1.
AK155589 mRNA. Translation: BAE33337.1.
RefSeqiNP_001106797.1. NM_001113326.1.
NP_112472.2. NM_031195.2.
UniGeneiMm.239291.

Genome annotation databases

GeneIDi20288.
KEGGimmu:20288.
UCSCiuc009lmk.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK028480 mRNA. Translation: BAC25973.1 .
AK150518 mRNA. Translation: BAE29630.1 .
AK151403 mRNA. Translation: BAE30370.1 .
AK151855 mRNA. Translation: BAE30744.1 .
AK155589 mRNA. Translation: BAE33337.1 .
RefSeqi NP_001106797.1. NM_001113326.1.
NP_112472.2. NM_031195.2.
UniGenei Mm.239291.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 20288.
KEGGi mmu:20288.
UCSCi uc009lmk.1. mouse.

Organism-specific databases

CTDi 4481.
MGIi MGI:98257. Msr1.

Phylogenomic databases

GeneTreei ENSGT00640000091447.
HOVERGENi HBG002473.
KOi K06558.

Miscellaneous databases

ChiTaRSi MSR1. mouse.
NextBioi 297995.
SOURCEi Search...

Gene expression databases

Genevestigatori Q8CED7.

Family and domain databases

InterProi IPR008160. Collagen.
IPR003543. Macro_scav_rcpt.
[Graphical view ]
Pfami PF01391. Collagen. 2 hits.
PF03523. Macscav_rec. 1 hit.
[Graphical view ]
PRINTSi PR01408. MACSCAVRCPTR.
ProtoNeti Search...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  7. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported.
  8. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  9. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.

Entry informationi

Entry nameiQ8CED7_MOUSE
AccessioniPrimary (citable) accession number: Q8CED7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: January 22, 2014
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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