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Protein
Submitted name:

Putative uncharacterized protein

Gene

Msr1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. scavenger receptor activity Source: InterPro

GO - Biological processi

  1. lipoprotein transport Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Msr1Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98257. Msr1.

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ8CED7.

Expressioni

Gene expression databases

BgeeiQ8CED7.
ExpressionAtlasiQ8CED7. baseline and differential.
GenevestigatoriQ8CED7.

Structurei

3D structure databases

ProteinModelPortaliQ8CED7.
SMRiQ8CED7. Positions 274-352.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000119251.
HOVERGENiHBG002473.
KOiK06558.

Family and domain databases

InterProiIPR008160. Collagen.
IPR003543. Macro_scav_rcpt.
[Graphical view]
PfamiPF01391. Collagen. 2 hits.
PF03523. Macscav_rec. 1 hit.
[Graphical view]
PRINTSiPR01408. MACSCAVRCPTR.

Sequencei

Sequence statusi: Complete.

Q8CED7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKEMTENQR LCPHEQEDAD CSSESVKFDA RSMTASLPHS TKNGPSLQEK
60 70 80 90 100
LKSFKAALIA LYLLVFAVLI PVVGIVTAQL LNWEMKNCLV CSLNTSDTSQ
110 120 130 140 150
GPMEKENTSK VEMRFTIIME HMKDMEERIE SISNSKADLI DTERFQNFSM
160 170 180 190 200
ATDQRLNDIL LQLNSLISSV QEHGNSLDAI SKSLQSLNMT LLDVQLHTET
210 220 230 240 250
LNVRVRESTA KQQEDISKLE ERVYKVSAEV QSVKEEQAHV EQEVKQEVRV
260 270 280 290 300
LNNITNDLRL KDWEHSQTLK NITFIQGPPG PQGEKGDRGL TGQTGPPGAP
310 320 330 340 350
GIRGIPGVKG DRGQIGFPGG RGNPGAPGKP GRSGSPGPKG QKGEKGSVGG

SRSV
Length:354
Mass (Da):38,773
Last modified:February 28, 2003 - v1
Checksum:i348E084D2D8B644B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK028480 mRNA. Translation: BAC25973.1.
AK150518 mRNA. Translation: BAE29630.1.
AK151403 mRNA. Translation: BAE30370.1.
AK151855 mRNA. Translation: BAE30744.1.
AK155589 mRNA. Translation: BAE33337.1.
RefSeqiNP_001106797.1. NM_001113326.1.
NP_112472.2. NM_031195.2.
UniGeneiMm.239291.

Genome annotation databases

GeneIDi20288.
KEGGimmu:20288.
UCSCiuc009lmk.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK028480 mRNA. Translation: BAC25973.1.
AK150518 mRNA. Translation: BAE29630.1.
AK151403 mRNA. Translation: BAE30370.1.
AK151855 mRNA. Translation: BAE30744.1.
AK155589 mRNA. Translation: BAE33337.1.
RefSeqiNP_001106797.1. NM_001113326.1.
NP_112472.2. NM_031195.2.
UniGeneiMm.239291.

3D structure databases

ProteinModelPortaliQ8CED7.
SMRiQ8CED7. Positions 274-352.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ8CED7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20288.
KEGGimmu:20288.
UCSCiuc009lmk.1. mouse.

Organism-specific databases

CTDi4481.
MGIiMGI:98257. Msr1.

Phylogenomic databases

GeneTreeiENSGT00760000119251.
HOVERGENiHBG002473.
KOiK06558.

Miscellaneous databases

ChiTaRSiMsr1. mouse.
NextBioi297995.
SOURCEiSearch...

Gene expression databases

BgeeiQ8CED7.
ExpressionAtlasiQ8CED7. baseline and differential.
GenevestigatoriQ8CED7.

Family and domain databases

InterProiIPR008160. Collagen.
IPR003543. Macro_scav_rcpt.
[Graphical view]
PfamiPF01391. Collagen. 2 hits.
PF03523. Macscav_rec. 1 hit.
[Graphical view]
PRINTSiPR01408. MACSCAVRCPTR.
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2000)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  7. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported.
  8. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2004)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.
  9. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Bone marrowImported and SkinImported.

Entry informationi

Entry nameiQ8CED7_MOUSE
AccessioniPrimary (citable) accession number: Q8CED7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 28, 2003
Last sequence update: February 28, 2003
Last modified: March 31, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.