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Protein

Protein FAM160B1

Gene

Fam160b1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM160B1
Gene namesi
Name:Fam160b1
Synonyms:Kiaa1600
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 19

Organism-specific databases

MGIiMGI:2147545. Fam160b1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002846491 – 764Protein FAM160B1Add BLAST764

Proteomic databases

EPDiQ8CDM8.
PaxDbiQ8CDM8.
PeptideAtlasiQ8CDM8.
PRIDEiQ8CDM8.

PTM databases

iPTMnetiQ8CDM8.
PhosphoSitePlusiQ8CDM8.

Expressioni

Gene expression databases

BgeeiENSMUSG00000033478.
GenevisibleiQ8CDM8. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000048903.

Structurei

3D structure databases

ProteinModelPortaliQ8CDM8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0518 family.Curated

Phylogenomic databases

eggNOGiENOG410IN31. Eukaryota.
ENOG410XTDG. LUCA.
GeneTreeiENSGT00760000119270.
HOVERGENiHBG107875.
InParanoidiQ8CDM8.
OMAiTYLRDAH.
OrthoDBiEOG091G04PO.
PhylomeDBiQ8CDM8.
TreeFamiTF313941.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
InterProiView protein in InterPro
IPR011989. ARM-like.
IPR019384. RetinoicA-induced_16-like.
PfamiView protein in Pfam
PF10257. RAI16-like. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8CDM8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MFSKLTSILQ HAVEALAPSL PLQEDFVYHW KAITHYYIET SDDKAPVTDT
60 70 80 90 100
NIPSHLEQML DILVQEENER ESGETGPCME YLLHHKILET LYTLGKADCP
110 120 130 140 150
PGMKQQVLVF YTKLLGRIRQ PLLPHINVHR PVQKLIRLCG EVLATPTENE
160 170 180 190 200
EIQFLCIVCA KLKQDPYLVN FFLENKSKSL VSRGALSVIS EDGPKGQDPG
210 220 230 240 250
SGDVSQCQQP QELSGATGVE PTESEEEPPH QMDDLSASLD DLNVTSLPEA
260 270 280 290 300
SAVRPNQDYN LVNSLLNLTR SPDGRIAVKA CEGLMLLVSL PEPAAAKCLA
310 320 330 340 350
QSTCLCELLT GRLTSLYKAL PQSVDPLDIE TVEAVNWGLD SYSHKEDASA
360 370 380 390 400
FPGKRALISF LSWFDYCDQL IKEAQKTAAV ALAKAIHERF FVGVMEPQLM
410 420 430 440 450
QTSEMGILTS TALLHRIVRQ VTSDVLLQEM VVFILGEQRE PETLSEISRH
460 470 480 490 500
PLRHRLIEHC DHISDEISIM TLRMFEHLLQ KPNEHILYNL VLRNLEERNY
510 520 530 540 550
TENKPSCPED KDVVENGLIA GAVDLEEDPL FTDISPDNTL PNQEWICSPR
560 570 580 590 600
TSPDHPKNDG KTEVHKVVNS FLCLVPDDAK SSYHVEGTGY DTYLRDAHRQ
610 620 630 640 650
FRDYCAICSR WEWPGAPKPL EKCDLEAAFF EGHFLKVLFD RMGRILDQPY
660 670 680 690 700
DVNLQVTSVL SRLSLFPHPH THEYLLDPYI NLASGCRSLF SVIVRVVGDL
710 720 730 740 750
MVRIQRIQDF TPKLLLVRKR LLGLEPEGPI VDHITLLEGV IVLEEFCKEL
760
AAIAFVKYHA SATP
Length:764
Mass (Da):86,017
Last modified:April 17, 2007 - v2
Checksum:i90D4F625C02DD286
GO
Isoform 2 (identifier: Q8CDM8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     524-764: Missing.

Note: No experimental confirmation available.
Show »
Length:523
Mass (Da):58,533
Checksum:i915A4DD230572FBF
GO

Sequence cautioni

The sequence BAC32767 differs from that shown. Reason: Frameshift at position 210.Curated
The sequence BC079562 differs from that shown. Reason: Frameshift at position 711.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti95G → R in BAC32767 (PubMed:16141072).Curated1
Sequence conflicti477H → Y in BAE42971 (PubMed:16141072).Curated1
Sequence conflicti492L → S in BAC32767 (PubMed:16141072).Curated1
Sequence conflicti518L → Q in BAC26638 (PubMed:16141072).Curated1
Sequence conflicti548S → T in BAE42971 (PubMed:16141072).Curated1
Sequence conflicti578D → E in BAE42971 (PubMed:16141072).Curated1
Sequence conflicti607I → V in BAE42971 (PubMed:16141072).Curated1
Sequence conflicti680I → V in BAE42971 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_024592524 – 764Missing in isoform 2. 1 PublicationAdd BLAST241

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK029835 mRNA. Translation: BAC26638.1.
AK046518 mRNA. Translation: BAC32767.1. Frameshift.
AK172373 mRNA. Translation: BAE42971.1.
BC023048 mRNA. Translation: AAH23048.1.
BC062949 mRNA. Translation: AAH62949.1.
BC079562 mRNA. No translation available.
AK122530 mRNA. Translation: BAC65812.1.
CCDSiCCDS29925.1. [Q8CDM8-1]
RefSeqiNP_663480.3. NM_145505.4. [Q8CDM8-1]
UniGeneiMm.358870.

Genome annotation databases

EnsembliENSMUST00000036407; ENSMUSP00000048903; ENSMUSG00000033478. [Q8CDM8-1]
GeneIDi226252.
KEGGimmu:226252.
UCSCiuc008iac.2. mouse. [Q8CDM8-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiF16B1_MOUSE
AccessioniPrimary (citable) accession number: Q8CDM8
Secondary accession number(s): Q3T9P9
, Q68FM8, Q6P5D5, Q80TB5, Q8C8M2, Q8R1V3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: April 17, 2007
Last modified: June 7, 2017
This is version 100 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries