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Protein
Submitted name:

Prominin-1

Gene

Prom1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Prominin-1Imported
Gene namesi
Name:Prom1Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 5

Organism-specific databases

MGIiMGI:1100886. Prom1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei99 – 12830HelicalSequence analysisAdd
BLAST
Transmembranei149 – 17022HelicalSequence analysisAdd
BLAST
Transmembranei425 – 45329HelicalSequence analysisAdd
BLAST
Transmembranei473 – 49927HelicalSequence analysisAdd
BLAST
Transmembranei786 – 80621HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 827808Sequence analysisPRO_5007214210Add
BLAST

Proteomic databases

MaxQBiQ8CDK8.

Expressioni

Gene expression databases

ExpressionAtlasiQ8CDK8. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000073751.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili245 – 28945Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG4331. Eukaryota.
ENOG410XRG0. LUCA.
GeneTreeiENSGT00530000063586.
HOVERGENiHBG053690.

Family and domain databases

InterProiIPR008795. Prominin.
[Graphical view]
PfamiPF05478. Prominin. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8CDK8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALVFSALLL LGLCGKISSE GQPAFHNTPG AMNYELPTTK YETQDTFNAG
60 70 80 90 100
IVGPLYKMVH IFLNVVQPND FPLDLIKKLI QNKNFDISVD SKEIALYEIG
110 120 130 140 150
VLICAILGLL FIILMPLVGC FFCMCRCCNK CGGEMHQRQK QNAPCRRKCL
160 170 180 190 200
GLSLLVICLL MSLGIIYGFV ANQQTRTRIK GTQKLAKSNF RDFQTLLTET
210 220 230 240 250
PKQIDYVVEQ YTNTKNKAFS DLDGIGSVLG GRIKDQLKPK VTPVLEEIKA
260 270 280 290 300
MATAIKQTKD ALQNMSSSLK SLQDAATQLN TNLSSVRNSI ENSLSSSDCT
310 320 330 340 350
SDPASKICDS IRPSLSSLGS SLNSSQLPSV DRELNTVTEV DKTDLESLVK
360 370 380 390 400
RGYTTIDEIP NTIQNQTVDV IKDVKNTLDS ISSNIKDMSQ SIPIEDMLLQ
410 420 430 440 450
VSHYLNNSNR YLNQELPKLE EYDSYWWLGG LIVCFLLTLI VTFFFLGLLC
460 470 480 490 500
GVFGYDKHAT PTRRGCVSNT GGIFLMAGVG FGFLFCWILM ILVVLTFVVG
510 520 530 540 550
ANVEKLLCEP YENKKLLQVL DTPYLLKEQW QFYLSGMLFN NPDINMTFEQ
560 570 580 590 600
VYRDCKRGRG IYAAFQLENV VNVSDHFNID QISENINTEL ENLNVNIDSI
610 620 630 640 650
ELLDNTGRKS LEDFAHSGID TIDYSTYLKE TEKSPTEVNL LTFASTLEAK
660 670 680 690 700
ANQLPEGKLK QAFLLDVQNI RAIHQHLLPP VQQSLNTLRQ SVWTLQQTSN
710 720 730 740 750
KLPEKVKKIL ASLDSVQHFL TNNVSLIVIG ETKKFGKTIL GYFEHYLHWV
760 770 780 790 800
FYAITEKMTS CKPMATAMDS AVNGILCGYV ADPLNLFWFG IGKATVLLLP
810 820
AVIIAIKLAK YYRRMDSEDV YDDPSRY
Length:827
Mass (Da):92,715
Last modified:March 1, 2003 - v1
Checksum:iDBCA5ED2DF401A18
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC102476 Genomic DNA. No translation available.
AC103621 Genomic DNA. No translation available.
AC164004 Genomic DNA. No translation available.
AK029921 mRNA. Translation: BAC26678.1.
RefSeqiNP_001157049.1. NM_001163577.1.
NP_001157056.1. NM_001163584.1.
NP_032961.2. NM_008935.2.
XP_006503852.1. XM_006503789.1.
XP_006503853.1. XM_006503790.2.
UniGeneiMm.6250.

Genome annotation databases

EnsembliENSMUST00000165909; ENSMUSP00000129909; ENSMUSG00000029086.
ENSMUST00000177946; ENSMUSP00000136483; ENSMUSG00000029086.
GeneIDi19126.
UCSCiuc008xie.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC102476 Genomic DNA. No translation available.
AC103621 Genomic DNA. No translation available.
AC164004 Genomic DNA. No translation available.
AK029921 mRNA. Translation: BAC26678.1.
RefSeqiNP_001157049.1. NM_001163577.1.
NP_001157056.1. NM_001163584.1.
NP_032961.2. NM_008935.2.
XP_006503852.1. XM_006503789.1.
XP_006503853.1. XM_006503790.2.
UniGeneiMm.6250.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000073751.

Proteomic databases

MaxQBiQ8CDK8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000165909; ENSMUSP00000129909; ENSMUSG00000029086.
ENSMUST00000177946; ENSMUSP00000136483; ENSMUSG00000029086.
GeneIDi19126.
UCSCiuc008xie.1. mouse.

Organism-specific databases

CTDi8842.
MGIiMGI:1100886. Prom1.

Phylogenomic databases

eggNOGiKOG4331. Eukaryota.
ENOG410XRG0. LUCA.
GeneTreeiENSGT00530000063586.
HOVERGENiHBG053690.

Miscellaneous databases

ChiTaRSiProm1. mouse.
SOURCEiSearch...

Gene expression databases

ExpressionAtlasiQ8CDK8. baseline and differential.

Family and domain databases

InterProiIPR008795. Prominin.
[Graphical view]
PfamiPF05478. Prominin. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  9. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  10. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  11. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.
  12. Ensembl
    Submitted (AUG-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ8CDK8_MOUSE
AccessioniPrimary (citable) accession number: Q8CDK8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: June 8, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.