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Protein
Submitted name:

Putative uncharacterized protein

Gene

Itsn2

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Itsn2Imported
Synonyms:Sh3d1BImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1338049. Itsn2.

PTM / Processingi

Proteomic databases

PaxDbiQ8CD59.

Expressioni

Gene expression databases

GenevisibleiQ8CD59. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000052758.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili8 – 8578Sequence analysisAdd
BLAST
Coiled coili134 – 17542Sequence analysisAdd
BLAST
Coiled coili210 – 24435Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1029. Eukaryota.
KOG4305. Eukaryota.
COG5422. LUCA.

Family and domain databases

InterProiIPR027029. Intersectin-2.
[Graphical view]
PANTHERiPTHR11216:SF29. PTHR11216:SF29. 2 hits.

Sequencei

Sequence statusi: Complete.

Q8CD59-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELEKRRQVL MEQQQREAER KAQKEKEEWE RKQRELQEQE WKKQLELEKR
60 70 80 90 100
LEKQRELERQ REEERRKEIE RREAAKQELE RQRRLEWERL RRQELLSQKT
110 120 130 140 150
REQEDIVRLS SRKKSLHLEL EAVNGKHQQI SGRLQDVQIR KQTQKTELEV
160 170 180 190 200
LDKQCDLEIM EIKQLQQELK EYQNKLIYLV PEKQLLNERI KNMQLSNTPD
210 220 230 240 250
SGISLLHKKS SEKEELCQRL KEQLDALEKE TASKLSEMDS FNNQLKCGSM
260 270
DDCVLQCLLS LLSCLNNLFL LLKVIF
Length:276
Mass (Da):33,547
Last modified:March 1, 2003 - v1
Checksum:iB8BC93085EDC2D7D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK031390 mRNA. Translation: BAC27381.1.
RefSeqiNP_001185898.1. NM_001198969.2.
UniGeneiMm.341204.

Genome annotation databases

GeneIDi20403.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK031390 mRNA. Translation: BAC27381.1.
RefSeqiNP_001185898.1. NM_001198969.2.
UniGeneiMm.341204.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000052758.

Proteomic databases

PaxDbiQ8CD59.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20403.

Organism-specific databases

CTDi50618.
MGIiMGI:1338049. Itsn2.

Phylogenomic databases

eggNOGiKOG1029. Eukaryota.
KOG4305. Eukaryota.
COG5422. LUCA.

Miscellaneous databases

ChiTaRSiItsn2. mouse.
NextBioi298368.
SOURCEiSearch...

Gene expression databases

GenevisibleiQ8CD59. MM.

Family and domain databases

InterProiIPR027029. Intersectin-2.
[Graphical view]
PANTHERiPTHR11216:SF29. PTHR11216:SF29. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.

Entry informationi

Entry nameiQ8CD59_MOUSE
AccessioniPrimary (citable) accession number: Q8CD59
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: March 16, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.