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Q8CD56 (Q8CD56_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
OrganismMus musculus (Mouse) EMBL BAC27385.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length635 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q8CD56 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: B276D193E75F5183

FASTA63571,612
        10         20         30         40         50         60 
MKCVLVATEG AEVLFYWTDE EFAESLRLKL QQSEDEEEEL PVLEDQLSTL LAPVIISSMT 

        70         80         90        100        110        120 
MMEKLSDTYT CFSTENDNHL YVLHLFGEYL FVAINGDHSE SEGDLRRKLC VLKYLFEVHF 

       130        140        150        160        170        180 
GLVTVDGQLI RKELRPPDLE ERARVWKHFQ RLLGTYSYLR DREQSFAVEA VERLIHPQLC 

       190        200        210        220        230        240 
EQSIETLERH VVQAINASPE RGGEEDLHAF LLVHCKLLAF YSGHGASTLR PADLLALILL 

       250        260        270        280        290        300 
VQDLQPSPGT TEEEEEEEDS DSPQVPEHKG NRRRPKSSQN IPVQQARSQS TSVPTRSSRE 

       310        320        330        340        350        360 
TDTDSISLPE EYFTPAPSPG DQSSGSLVWL DGGTPPSDAL QMAEDTPEGL ASHSPELPSP 

       370        380        390        400        410        420 
RRIFLDANIK ENYCPLVPHT MYCLPLWPGI NMVLLAKSPS TPLALILYQL LDGFSLLEKK 

       430        440        450        460        470        480 
LKEGQEAGSA LRSQPFVADL RQKMDKFIKN RVGQEIQNTW LEFKSKAFSR SEPGSSWELL 

       490        500        510        520        530        540 
QVCGKLKRQL CVIYRLSFLV TAPSRGGPHL PQHLQDRAQK LMKERLLDWK DFLLVKSRRN 

       550        560        570        580        590        600 
VTMVSYLEDF PGLVHFIYVD RTTGQMVAPS LSPNEKMSSE LGKGPLAAFV KAKVWSPRTR 

       610        620        630 
VLRQHSALSL SCSHTPAEWT GVVSTQEASF SALLI 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27385.1.
Tissue: Testis EMBL BAC27385.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27385.1.
Tissue: Testis EMBL BAC27385.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27385.1.
Tissue: Testis EMBL BAC27385.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27385.1.
Tissue: Testis EMBL BAC27385.1.
[5]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27385.1.
Tissue: Testis EMBL BAC27385.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27385.1.
Tissue: Testis EMBL BAC27385.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27385.1.
Tissue: Testis EMBL BAC27385.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27385.1.
Tissue: Testis EMBL BAC27385.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK031397 mRNA. Translation: BAC27385.1.
UniGeneMm.218381.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000026194.

Proteomic databases

PRIDEQ8CD56.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

HOGENOMHOG000082664.
HOVERGENHBG004099.

Gene expression databases

GenevestigatorQ8CD56.

Family and domain databases

InterProIPR026053. HPS1.
[Graphical view]
PANTHERPTHR12761. PTHR12761. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ8CD56_MOUSE
AccessionPrimary (citable) accession number: Q8CD56
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: January 22, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)