Q8CD56 (Q8CD56_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL BAC27385.1

Gene names

Name:

Hps1 MGI 2177763

Organism

Mus musculus (Mouse) EMBL BAC27385.1

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	635 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Sequences

	Sequence		Length	Mass (Da)
	Q8CD56 [UniParc]. Last modified March 1, 2003. Version 1. Checksum: B276D193E75F5183	FASTA	635	71,612
	10 20 30 40 50 60 MKCVLVATEG AEVLFYWTDE EFAESLRLKL QQSEDEEEEL PVLEDQLSTL LAPVIISSMT 70 80 90 100 110 120 MMEKLSDTYT CFSTENDNHL YVLHLFGEYL FVAINGDHSE SEGDLRRKLC VLKYLFEVHF 130 140 150 160 170 180 GLVTVDGQLI RKELRPPDLE ERARVWKHFQ RLLGTYSYLR DREQSFAVEA VERLIHPQLC 190 200 210 220 230 240 EQSIETLERH VVQAINASPE RGGEEDLHAF LLVHCKLLAF YSGHGASTLR PADLLALILL 250 260 270 280 290 300 VQDLQPSPGT TEEEEEEEDS DSPQVPEHKG NRRRPKSSQN IPVQQARSQS TSVPTRSSRE 310 320 330 340 350 360 TDTDSISLPE EYFTPAPSPG DQSSGSLVWL DGGTPPSDAL QMAEDTPEGL ASHSPELPSP 370 380 390 400 410 420 RRIFLDANIK ENYCPLVPHT MYCLPLWPGI NMVLLAKSPS TPLALILYQL LDGFSLLEKK 430 440 450 460 470 480 LKEGQEAGSA LRSQPFVADL RQKMDKFIKN RVGQEIQNTW LEFKSKAFSR SEPGSSWELL 490 500 510 520 530 540 QVCGKLKRQL CVIYRLSFLV TAPSRGGPHL PQHLQDRAQK LMKERLLDWK DFLLVKSRRN 550 560 570 580 590 600 VTMVSYLEDF PGLVHFIYVD RTTGQMVAPS LSPNEKMSSE LGKGPLAAFV KAKVWSPRTR 610 620 630 VLRQHSALSL SCSHTPAEWT GVVSTQEASF SALLI

References

[1]	"High-efficiency full-length cDNA cloning." Carninci P., Hayashizaki Y. Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC27385.1. Tissue: Testis EMBL BAC27385.1.
[2]	"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes." Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y. Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC27385.1. Tissue: Testis EMBL BAC27385.1.
[3]	"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer." Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y. Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC27385.1. Tissue: Testis EMBL BAC27385.1.
[4]	"Functional annotation of a full-length mouse cDNA collection." The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium Nature 409:685-690(2001) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC27385.1. Tissue: Testis EMBL BAC27385.1.
[5]	Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y. Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC27385.1. Tissue: Testis EMBL BAC27385.1.
[6]	"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs." The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team Nature 420:563-573(2002) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC27385.1. Tissue: Testis EMBL BAC27385.1.
[7]	"The Transcriptional Landscape of the Mammalian Genome." The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) Science 309:1559-1563(2005) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC27385.1. Tissue: Testis EMBL BAC27385.1.
[8]	"Antisense Transcription in the Mammalian Transcriptome." RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC27385.1. Tissue: Testis EMBL BAC27385.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AK031397 mRNA. Translation: BAC27385.1.
IPI	IPI00406671.
UniGene	Mm.218381.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	10090.ENSMUSP00000026194. Q8CD56.
Proteomic databases
PRIDE	Q8CD56.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Phylogenomic databases
HOGENOM	HOG000082664.
HOVERGEN	HBG004099.
Gene expression databases
ArrayExpress	Q8CD56.
Genevestigator	Q8CD56.
Family and domain databases
InterPro	IPR026053. HPS1. [Graphical view]
PANTHER	PTHR12761. PTHR12761. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q8CD56_MOUSE

Accession

Primary (citable) accession number: Q8CD56

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2003
Last sequence update:	March 1, 2003
Last modified:	April 3, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)