Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative uncharacterized protein

Gene

Lima1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Lima1Imported
Synonyms:D15Ertd366eImported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1920992. Lima1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Expressioni

Gene expression databases

BgeeiENSMUSG00000023022.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000073371.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini226 – 286LIM zinc-bindingInterPro annotationAdd BLAST61

Sequence similaritiesi

Contains 1 LIM zinc-binding domain.UniRule annotation

Keywords - Domaini

LIM domainUniRule annotation

Phylogenomic databases

eggNOGiENOG410ITI7. Eukaryota.
ENOG41102B0. LUCA.
HOVERGENiHBG051492.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR028740. EPLIN.
IPR001781. Znf_LIM.
[Graphical view]
PANTHERiPTHR24206:SF34. PTHR24206:SF34. 1 hit.
PfamiPF00412. LIM. 1 hit.
[Graphical view]
SMARTiSM00132. LIM. 1 hit.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8CD09-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENCLGDSRH EAEKPETSEN TETSGKIEKY NVPLNRLKMM FEKGEHNQTK
60 70 80 90 100
SLWTQSRNAG GRRLSENNCS LDDWEIGAGH LSSSAFNSEK NESKRNLELP
110 120 130 140 150
RLSETSIKDR MAKYQAAVSK QSSPASYTNE LKTSESKTHK WEQKENVPPG
160 170 180 190 200
PEACSVHQEG SKVSTTENSL VALSVPAEDD TCNSQVKSEA QQPMHPKPLS
210 220 230 240 250
PDARTSSLPE SSPSKTAKKF QAPAKESCVE CQKTVYPMER LLANQQVFHI
260 270 280 290 300
SCFRCSYCNN KLSLGTYASL HGRIYCKPHF NQLFKSKGNY DEGFGHKQHK
310 320 330 340 350
DLWASKSDNE ETLGRPAQPP NAGESPHSPG VEDAPIAKVG VLAASMEAKA
360 370 380 390 400
SSQREREDKP AETKKLRIAW PPPAELGGSG SALEEGIKVS KPKWPPEDDV
410 420 430 440 450
CKTEAPEDVD LDLKKLRRSS SLKERSRPFT VAASFRTSSI KSPKASSPSL
460 470 480 490 500
RKGWSESEQS EEFGGGIATM ERKQTENARP SGEKENVGKS RWQGEEVPRS
510 520 530 540 550
KDRSSFELES ENFMENGANI AEDDNHVHAQ QSPLEPEAPG WSGFVDTTAA
560 570 580 590
KEFTTQNQKS QDVGFWEGEV VRELSVEEQI KRNRYYDEDE DEE
Length:593
Mass (Da):66,018
Last modified:March 1, 2003 - v1
Checksum:i122AB8AA07E1FC0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK031698 mRNA. Translation: BAC27520.1.
AK132314 mRNA. Translation: BAE21099.1.
AK167220 mRNA. Translation: BAE39345.1.
RefSeqiNP_001107017.1. NM_001113545.1.
NP_075550.2. NM_023063.4.
UniGeneiMm.33207.

Genome annotation databases

GeneIDi65970.
KEGGimmu:65970.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK031698 mRNA. Translation: BAC27520.1.
AK132314 mRNA. Translation: BAE21099.1.
AK167220 mRNA. Translation: BAE39345.1.
RefSeqiNP_001107017.1. NM_001113545.1.
NP_075550.2. NM_023063.4.
UniGeneiMm.33207.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000073371.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi65970.
KEGGimmu:65970.

Organism-specific databases

CTDi51474.
MGIiMGI:1920992. Lima1.

Phylogenomic databases

eggNOGiENOG410ITI7. Eukaryota.
ENOG41102B0. LUCA.
HOVERGENiHBG051492.

Miscellaneous databases

ChiTaRSiLima1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000023022.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR028740. EPLIN.
IPR001781. Znf_LIM.
[Graphical view]
PANTHERiPTHR24206:SF34. PTHR24206:SF34. 1 hit.
PfamiPF00412. LIM. 1 hit.
[Graphical view]
SMARTiSM00132. LIM. 1 hit.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ8CD09_MOUSE
AccessioniPrimary (citable) accession number: Q8CD09
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: November 30, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.