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Q8CAF8 (Q8CAF8_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Gabbr1 MGI 1860139
OrganismMus musculus (Mouse) EMBL BAC30149.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length748 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAC30149.1

Sequences

Sequence LengthMass (Da)Tools
Q8CAF8 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: 991B3DB1749A8614

FASTA74884,777
        10         20         30         40         50         60 
IHHDSKCDPG QATKYLYELL YNDPIKIILM PGCSSVSTLV AEAARMWNLI VLSYGSSSPA 

        70         80         90        100        110        120 
LSNRQRFPTF FRTHPSATLH NPTRVKLFEK WGWKKIATIQ QTTEVFTSTL DDLEERVKEA 

       130        140        150        160        170        180 
GIEITFRQSF FSDPAVPVKN LKRQDARIIV GLFYETEARK VFCEVYKERL FGKKYVWFLI 

       190        200        210        220        230        240 
GWYADNWFKT YDPSINCTVE EMTEAVEGHI TTEIVMLNPA NTRSISNMTS QEFVEKLTKR 

       250        260        270        280        290        300 
LKRHPEETGG FQEAPLAYDA IWALALALNK TSGGGGRSGV RLEDFNYNNQ TITDQIYRAM 

       310        320        330        340        350        360 
NSSSFEGVSG HVVFDASGSR MAWTLIEQLQ GGSYKKIGYY DSTKDDLSWS KTDKWIGGSP 

       370        380        390        400        410        420 
PADQTLVIKT FRFLSQKLFI SVSVLSSLGI VLAVVCLSFN IYNSHVRYIQ NSQPNLNNLT 

       430        440        450        460        470        480 
AVGCSLALAA VFPLGLDGYH IGRSQFPFVC QARLWLLGLG FSLGYGSMFT KIWWVHTVFT 

       490        500        510        520        530        540 
KKEEKKEWRK TLEPWKLYAT VGLLVGMDIL TLAIWQIVDP LHRTIETFAK EEPKEDIDVS 

       550        560        570        580        590        600 
ILPQLEHCSS KKMNTWLGIF YGYKGLLLLL GIFLAYETKS VSTEKINDHR AVGMAIYNVA 

       610        620        630        640        650        660 
VLCLITAPVT MILSSQQDAA FAFASLAIVF SSYITLVVLF VPKMRRLITR GEWQSEAQDT 

       670        680        690        700        710        720 
MKTGSSTNNN EEEKSRLLEK ENRELEKIIA EKEERVSELR HQLQSRQQIR SRRHPPTPPD 

       730        740 
PSGGLPRGPS EPPDRLSCDG SRVHLLYK 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC30149.1.
Tissue: Hypothalamus EMBL BAC30149.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC30149.1.
Tissue: Hypothalamus EMBL BAC30149.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC30149.1.
Tissue: Hypothalamus EMBL BAC30149.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC30149.1.
Tissue: Hypothalamus EMBL BAC30149.1.
[5]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC30149.1.
Tissue: Hypothalamus EMBL BAC30149.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC30149.1.
Tissue: Hypothalamus EMBL BAC30149.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC30149.1.
Tissue: Hypothalamus EMBL BAC30149.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC30149.1.
Tissue: Hypothalamus EMBL BAC30149.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK038844 mRNA. Translation: BAC30149.1.
UniGeneMm.32191.

3D structure databases

ProteinModelPortalQ8CAF8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

MGIMGI:1860139. Gabbr1.

Phylogenomic databases

HOVERGENHBG051688.
InParanoidQ8CAF8.

Gene expression databases

ArrayExpressQ8CAF8.
BgeeQ8CAF8.
GenevestigatorQ8CAF8.

Family and domain databases

InterProIPR001828. ANF_lig-bd_rcpt.
IPR002455. GPCR3_GABA-B.
IPR000337. GPCR_3.
IPR017978. GPCR_3_C.
IPR002456. GPCR_3_GABA_rcpt_B1.
IPR028082. Peripla_BP_I.
[Graphical view]
PANTHERPTHR10519. PTHR10519. 1 hit.
PfamPF00003. 7tm_3. 1 hit.
PF01094. ANF_receptor. 1 hit.
[Graphical view]
PRINTSPR01177. GABAB1RECPTR.
PR00248. GPCRMGR.
SUPFAMSSF53822. SSF53822. 1 hit.
PROSITEPS50259. G_PROTEIN_RECEP_F3_4. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSGABBR1. mouse.
SOURCESearch...

Entry information

Entry nameQ8CAF8_MOUSE
AccessionPrimary (citable) accession number: Q8CAF8
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: July 9, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)