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Q8CA63

- Q8CA63_MOUSE

UniProt

Q8CA63 - Q8CA63_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Ephb1

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 Mar 2003)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. axon guidance receptor activity Source: MGI
    3. transmembrane-ephrin receptor activity Source: MGI

    GO - Biological processi

    1. axon guidance Source: MGI
    2. camera-type eye morphogenesis Source: MGI
    3. central nervous system projection neuron axonogenesis Source: MGI
    4. cranial nerve development Source: MGI
    5. optic nerve morphogenesis Source: MGI
    6. retinal ganglion cell axon guidance Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:Ephb1Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:1096337. Ephb1.

    Subcellular locationi

    GO - Cellular componenti

    1. axon Source: MGI
    2. cytoplasm Source: MGI
    3. integral component of plasma membrane Source: MGI
    4. membrane Source: MGI
    5. membrane raft Source: MGI

    Expressioni

    Gene expression databases

    GenevestigatoriQ8CA63.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8CA63.
    SMRiQ8CA63. Positions 18-197.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG062180.
    InParanoidiQ8CA63.
    KOiK05110.

    Family and domain databases

    Gene3Di2.60.120.260. 1 hit.
    2.60.40.10. 1 hit.
    InterProiIPR001090. Ephrin_rcpt_lig-bd_dom.
    IPR003961. Fibronectin_type3.
    IPR008979. Galactose-bd-like.
    IPR009030. Growth_fac_rcpt_N_dom.
    IPR013783. Ig-like_fold.
    IPR001426. Tyr_kinase_rcpt_V_CS.
    [Graphical view]
    PfamiPF01404. Ephrin_lbd. 1 hit.
    PF00041. fn3. 1 hit.
    [Graphical view]
    SMARTiSM00615. EPH_lbd. 1 hit.
    SM00060. FN3. 1 hit.
    [Graphical view]
    SUPFAMiSSF49265. SSF49265. 1 hit.
    SSF49785. SSF49785. 1 hit.
    SSF57184. SSF57184. 2 hits.
    PROSITEiPS51550. EPH_LBD. 1 hit.
    PS50853. FN3. 1 hit.
    PS00790. RECEPTOR_TYR_KIN_V_1. 1 hit.
    PS00791. RECEPTOR_TYR_KIN_V_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8CA63-1 [UniParc]FASTAAdd to Basket

    « Hide

    MALDCLLLFL LASAVAAMEE TLMDTRTATA ELGWTANPAS GWEEVSGYDE    50
    NLNTIRTYQV CNVFEPNQNN WLLTTFINRR GAHRIYTEMR FTVRDCSSLP 100
    NVPGSCKETF NLYYYETDSV IATKKSAFWS EAPYLKVDTI AADESFSQVD 150
    FGGRLMKVNT EVRSFGPLTR NGFYLAFQDY GACMSLLSVR VFFKKCPSIV 200
    QNFAVFPETM TGAESTSLVI ARGTCIPNAE EVDVPIKLYC NGDGEWMVPI 250
    GRCTCKPGYE PENSVACKAC PAGTFKASQE AEGCSHCPSN SRSPSEASPI 300
    CTCRTGYYRA DFDPPEVACT SVPSGPRNVI SIVNETSIIL EWHPPRETGG 350
    RDDVTYNIIC KKCRADRRSC SRCDDNVEFV PRQLGLTECR VSISSLWAHT 400
    PYTFDIQAIN GVSSKSPFPP QHVSVNITTN QAGESGGFDV YICLCGWLFI 450
    YLYVGS 456
    Length:456
    Mass (Da):50,470
    Last modified:March 1, 2003 - v1
    Checksum:iD110B1DF4E36C565
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK039530 mRNA. Translation: BAC30375.1.
    RefSeqiNP_001161768.1. NM_001168296.1.
    NP_775623.3. NM_173447.3.
    UniGeneiMm.22897.

    Genome annotation databases

    GeneIDi270190.
    KEGGimmu:270190.
    UCSCiuc009rfo.2. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK039530 mRNA. Translation: BAC30375.1 .
    RefSeqi NP_001161768.1. NM_001168296.1.
    NP_775623.3. NM_173447.3.
    UniGenei Mm.22897.

    3D structure databases

    ProteinModelPortali Q8CA63.
    SMRi Q8CA63. Positions 18-197.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 270190.
    KEGGi mmu:270190.
    UCSCi uc009rfo.2. mouse.

    Organism-specific databases

    CTDi 2047.
    MGIi MGI:1096337. Ephb1.

    Phylogenomic databases

    HOVERGENi HBG062180.
    InParanoidi Q8CA63.
    KOi K05110.

    Miscellaneous databases

    NextBioi 393293.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q8CA63.

    Family and domain databases

    Gene3Di 2.60.120.260. 1 hit.
    2.60.40.10. 1 hit.
    InterProi IPR001090. Ephrin_rcpt_lig-bd_dom.
    IPR003961. Fibronectin_type3.
    IPR008979. Galactose-bd-like.
    IPR009030. Growth_fac_rcpt_N_dom.
    IPR013783. Ig-like_fold.
    IPR001426. Tyr_kinase_rcpt_V_CS.
    [Graphical view ]
    Pfami PF01404. Ephrin_lbd. 1 hit.
    PF00041. fn3. 1 hit.
    [Graphical view ]
    SMARTi SM00615. EPH_lbd. 1 hit.
    SM00060. FN3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49265. SSF49265. 1 hit.
    SSF49785. SSF49785. 1 hit.
    SSF57184. SSF57184. 2 hits.
    PROSITEi PS51550. EPH_LBD. 1 hit.
    PS50853. FN3. 1 hit.
    PS00790. RECEPTOR_TYR_KIN_V_1. 1 hit.
    PS00791. RECEPTOR_TYR_KIN_V_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    5. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.

    Entry informationi

    Entry nameiQ8CA63_MOUSE
    AccessioniPrimary (citable) accession number: Q8CA63
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 1, 2003
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)