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Q8C9K1 (Q8C9K1_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 91. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length160 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcell adhesion

Inferred from electronic annotation. Source: InterPro

ectopic germ cell programmed cell death

Inferred from mutant phenotype PubMed 17107997. Source: MGI

extrinsic apoptotic signaling pathway in absence of ligand

Inferred from direct assay PubMed 15039234. Source: MGI

germ cell development

Traceable author statement PubMed 12140361. Source: MGI

negative regulation of apoptotic process

Inferred from genetic interaction PubMed 17107997. Source: MGI

negative regulation of mast cell apoptotic process

Inferred from direct assay PubMed 12714518. Source: MGI

neural crest cell migration

Inferred from direct assay PubMed 11401406. Source: MGI

positive regulation of MAP kinase activity

Inferred from genetic interaction PubMed 10620616. Source: MGI

positive regulation of Ras protein signal transduction

Inferred from direct assay PubMed 11435472. Source: MGI

positive regulation of cell proliferation

Inferred from direct assay PubMed 11401406PubMed 11435472. Source: MGI

positive regulation of mast cell proliferation

Inferred from direct assay PubMed 15947484. Source: MGI

positive regulation of melanocyte differentiation

Inferred from direct assay PubMed 16427619. Source: MGI

positive regulation of myeloid leukocyte differentiation

Inferred from genetic interaction PubMed 1375116PubMed 7690439. Source: MGI

positive regulation of peptidyl-tyrosine phosphorylation

Inferred from direct assay PubMed 10872802. Source: MGI

   Cellular_componentextracellular space

Inferred from direct assay PubMed 14525951PubMed 7690439. Source: MGI

integral component of membrane

Inferred from direct assay PubMed 12140361. Source: MGI

plasma membrane

Inferred from direct assay PubMed 14525951. Source: MGI

   Molecular_functioncytokine activity

Inferred from direct assay PubMed 12714518. Source: MGI

stem cell factor receptor binding

Inferred from direct assay PubMed 10872802. Source: MGI

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue1601 Ensembl ENSMUSP00000123360 EMBL BAC31113.1

Sequences

Sequence LengthMass (Da)Tools
Q8C9K1 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: B12AC581346AAE6D

FASTA16017,493
        10         20         30         40         50         60 
MKKTQVSRAR PGGARKLSKK IAPGAPGSPA RSGTGNQAMW GCALPTWIIT CIYLQLLLFN 

        70         80         90        100        110        120 
PLVKTKEICG NPVTDNVKDI TKLVANLPND YMITLNYVAG MDVLPSHCWL RDMVIQLSLS 

       130        140        150        160 
LTTLLDKFSN ISEGLSNYSI IDKLGKIVDD LVLCMEENAP 

« Hide

References

« Hide 'large scale' references
[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC31113.1.
Tissue: Thymus EMBL BAC31113.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC31113.1.
Tissue: Thymus EMBL BAC31113.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC31113.1.
Tissue: Thymus EMBL BAC31113.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC31113.1.
Tissue: Thymus EMBL BAC31113.1.
[5]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC31113.1.
Tissue: Thymus EMBL BAC31113.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC31113.1.
Tissue: Thymus EMBL BAC31113.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC31113.1.
Tissue: Thymus EMBL BAC31113.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC31113.1.
Tissue: Thymus EMBL BAC31113.1.
[9]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000123360.
[10]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000123360.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC159910 Genomic DNA. No translation available.
AK041961 mRNA. Translation: BAC31113.1.
UniGeneMm.45124.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000130190; ENSMUSP00000123360; ENSMUSG00000019966.
UCSCuc007gxr.1. mouse.

Organism-specific databases

MGIMGI:96974. Kitl.

Phylogenomic databases

GeneTreeENSGT00390000018272.
HOVERGENHBG060088.

Gene expression databases

GenevestigatorQ8C9K1.

Family and domain databases

Gene3D1.20.1250.10. 1 hit.
InterProIPR009079. 4_helix_cytokine-like_core.
IPR012351. 4_helix_cytokine_core.
IPR003452. SCF.
[Graphical view]
PANTHERPTHR11574. PTHR11574. 1 hit.
PfamPF02404. SCF. 1 hit.
[Graphical view]
SUPFAMSSF47266. SSF47266. 1 hit.
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameQ8C9K1_MOUSE
AccessionPrimary (citable) accession number: Q8C9K1
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: April 16, 2014
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)