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Protein

Protein FAM110B

Gene

Fam110b

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM110B
Gene namesi
Name:Fam110b
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:1916593. Fam110b.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 366366Protein FAM110BPRO_0000285652Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei234 – 2341PhosphoserineCombined sources
Modified residuei297 – 2971PhosphoserineCombined sources

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ8C739.
PaxDbiQ8C739.
PeptideAtlasiQ8C739.
PRIDEiQ8C739.

PTM databases

iPTMnetiQ8C739.
PhosphoSiteiQ8C739.

Expressioni

Gene expression databases

BgeeiQ8C739.
ExpressionAtlasiQ8C739. baseline and differential.
GenevisibleiQ8C739. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000062734.

Structurei

3D structure databases

ProteinModelPortaliQ8C739.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the FAM110 family.Curated

Phylogenomic databases

eggNOGiENOG410IF7K. Eukaryota.
ENOG410ZHRK. LUCA.
GeneTreeiENSGT00530000063395.
HOGENOMiHOG000112424.
HOVERGENiHBG051171.
InParanoidiQ8C739.
OMAiWPPHRPD.
OrthoDBiEOG7NGQCF.
PhylomeDBiQ8C739.
TreeFamiTF330964.

Family and domain databases

InterProiIPR025740. FAM110.
IPR025741. FAM110_C.
IPR025739. FAM110_N.
[Graphical view]
PANTHERiPTHR14758. PTHR14758. 1 hit.
PfamiPF14160. FAM110_C. 1 hit.
PF14161. FAM110_N. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8C739-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTETLQTGS MVKPVSPAGT FTSAVPLRIL NKGPDYFRRQ AEPNPKRLSA
60 70 80 90 100
VERLEADKAK YVKSQEVINA KQEPVKPAVL AKPPVCPGTK RALGSPTLKV
110 120 130 140 150
FGNHAKTESG VQRETLKLEI LKNIINSSEG SSSGSGHKHS SRNWPPHRDT
160 170 180 190 200
TDLHRHSFAE SLKVYPTPGH GSPQESSSHV SRRLLEQSAE TFLHVSHSSS
210 220 230 240 250
DIRKVTSVKP LKAIPCSSSA PPLPPKPKVA AMKSPEADQV EPACGVSRRP
260 270 280 290 300
SLQRSKSDLS DRYFRVDADV ERFFNYCGLD PEELENLGME NFARANSDII
310 320 330 340 350
SLNFRSASMI SSDCEQSQDS NSDLRNDDSA NDRVPYGISA IERNARIIKW
360
LYSIKQARES QKVSHV
Length:366
Mass (Da):40,360
Last modified:March 1, 2003 - v1
Checksum:iB5DE416119777BBA
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti271 – 2711E → D in BAE26831 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK052596 mRNA. Translation: BAC35053.1.
AK146011 mRNA. Translation: BAE26831.1.
AK159054 mRNA. Translation: BAE34787.1.
AL732614 Genomic DNA. Translation: CAM20807.1.
BC055683 mRNA. Translation: AAH55683.1.
CCDSiCCDS17948.1.
RefSeqiNP_775602.1. NM_173426.2.
XP_006537958.1. XM_006537895.2.
XP_006537959.1. XM_006537896.2.
XP_006537960.1. XM_006537897.1.
XP_006537961.1. XM_006537898.2.
UniGeneiMm.331470.
Mm.458843.

Genome annotation databases

EnsembliENSMUST00000054857; ENSMUSP00000062734; ENSMUSG00000049119.
ENSMUST00000108380; ENSMUSP00000104017; ENSMUSG00000049119.
ENSMUST00000171403; ENSMUSP00000127942; ENSMUSG00000049119.
GeneIDi242297.
KEGGimmu:242297.
UCSCiuc008rxe.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK052596 mRNA. Translation: BAC35053.1.
AK146011 mRNA. Translation: BAE26831.1.
AK159054 mRNA. Translation: BAE34787.1.
AL732614 Genomic DNA. Translation: CAM20807.1.
BC055683 mRNA. Translation: AAH55683.1.
CCDSiCCDS17948.1.
RefSeqiNP_775602.1. NM_173426.2.
XP_006537958.1. XM_006537895.2.
XP_006537959.1. XM_006537896.2.
XP_006537960.1. XM_006537897.1.
XP_006537961.1. XM_006537898.2.
UniGeneiMm.331470.
Mm.458843.

3D structure databases

ProteinModelPortaliQ8C739.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000062734.

PTM databases

iPTMnetiQ8C739.
PhosphoSiteiQ8C739.

Proteomic databases

MaxQBiQ8C739.
PaxDbiQ8C739.
PeptideAtlasiQ8C739.
PRIDEiQ8C739.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000054857; ENSMUSP00000062734; ENSMUSG00000049119.
ENSMUST00000108380; ENSMUSP00000104017; ENSMUSG00000049119.
ENSMUST00000171403; ENSMUSP00000127942; ENSMUSG00000049119.
GeneIDi242297.
KEGGimmu:242297.
UCSCiuc008rxe.1. mouse.

Organism-specific databases

CTDi90362.
MGIiMGI:1916593. Fam110b.

Phylogenomic databases

eggNOGiENOG410IF7K. Eukaryota.
ENOG410ZHRK. LUCA.
GeneTreeiENSGT00530000063395.
HOGENOMiHOG000112424.
HOVERGENiHBG051171.
InParanoidiQ8C739.
OMAiWPPHRPD.
OrthoDBiEOG7NGQCF.
PhylomeDBiQ8C739.
TreeFamiTF330964.

Miscellaneous databases

PROiQ8C739.
SOURCEiSearch...

Gene expression databases

BgeeiQ8C739.
ExpressionAtlasiQ8C739. baseline and differential.
GenevisibleiQ8C739. MM.

Family and domain databases

InterProiIPR025740. FAM110.
IPR025741. FAM110_C.
IPR025739. FAM110_N.
[Graphical view]
PANTHERiPTHR14758. PTHR14758. 1 hit.
PfamiPF14160. FAM110_C. 1 hit.
PF14161. FAM110_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Kidney, Placenta and Visual cortex.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Brain.
  4. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-234 AND SER-297, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brain, Kidney, Lung, Pancreas and Testis.

Entry informationi

Entry nameiF110B_MOUSE
AccessioniPrimary (citable) accession number: Q8C739
Secondary accession number(s): Q3UKH0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: March 1, 2003
Last modified: July 6, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.