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Protein

Amphoterin-induced protein 3

Gene

Amigo3

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

May mediate heterophilic cell-cell interaction. May contribute to signal transduction through its intracellular domain (By similarity).By similarity

GO - Biological processi

  1. brain development Source: GO_Central
  2. cell adhesion Source: MGI
  3. cell-cell adhesion Source: GO_Central
  4. heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules Source: UniProtKB
Complete GO annotation...

Keywords - Biological processi

Cell adhesion

Names & Taxonomyi

Protein namesi
Recommended name:
Amphoterin-induced protein 3
Alternative name(s):
AMIGO-3
Alivin-3
Gene namesi
Name:Amigo3Imported
Synonyms:Ali3Imported, Kiaa1851Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 9

Organism-specific databases

MGIiMGI:2444854. Amigo3.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini20 – 383364ExtracellularSequence AnalysisAdd
BLAST
Transmembranei384 – 40421HelicalSequence AnalysisAdd
BLAST
Topological domaini405 – 508104CytoplasmicSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence AnalysisAdd
BLAST
Chaini20 – 508489Amphoterin-induced protein 3Sequence AnalysisPRO_0000014514Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi34 ↔ 40PROSITE-ProRule annotation
Disulfide bondi38 ↔ 47PROSITE-ProRule annotation
Glycosylationi107 – 1071N-linked (GlcNAc...)Sequence Analysis
Glycosylationi142 – 1421N-linked (GlcNAc...)Sequence Analysis
Disulfide bondi223 ↔ 251PROSITE-ProRule annotation
Disulfide bondi225 ↔ 273PROSITE-ProRule annotation
Glycosylationi272 – 2721N-linked (GlcNAc...)Sequence Analysis
Disulfide bondi300 ↔ 352PROSITE-ProRule annotation
Glycosylationi301 – 3011N-linked (GlcNAc...)Sequence Analysis
Glycosylationi362 – 3621N-linked (GlcNAc...)Sequence Analysis
Glycosylationi368 – 3681N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PRIDEiQ8C2S7.

PTM databases

PhosphoSiteiQ8C2S7.

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Gene expression databases

BgeeiQ8C2S7.
CleanExiMM_AMIGO3.
GenevestigatoriQ8C2S7.

Interactioni

Subunit structurei

Binds AMIGO1 or AMIGO2.By similarity

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000082137.

Structurei

3D structure databases

ProteinModelPortaliQ8C2S7.
SMRiQ8C2S7. Positions 33-369.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 6137LRRNTAdd
BLAST
Repeati62 – 8322LRR 1Add
BLAST
Repeati86 – 10722LRR 2Add
BLAST
Repeati110 – 13324LRR 3Add
BLAST
Repeati134 – 15522LRR 4Add
BLAST
Repeati158 – 17821LRR 5Add
BLAST
Repeati184 – 20724LRR 6Add
BLAST
Domaini219 – 27557LRRCTAdd
BLAST
Domaini279 – 37092Ig-like C2-typeSequence AnalysisAdd
BLAST

Sequence similaritiesi

Contains 6 LRR (leucine-rich) repeats.Sequence Analysis
Contains 1 LRRCT domain.Curated
Contains 1 LRRNT domain.Curated

Keywords - Domaini

Immunoglobulin domain, Leucine-rich repeat, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG146733.
GeneTreeiENSGT00530000063545.
HOGENOMiHOG000231327.
HOVERGENiHBG080231.
InParanoidiQ8C2S7.
OMAiVCLATGP.
OrthoDBiEOG7C8GHP.
PhylomeDBiQ8C2S7.
TreeFamiTF326838.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR000372. LRR-contain_N.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF13855. LRR_8. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 1 hit.
SM00369. LRR_TYP. 1 hit.
SM00013. LRRNT. 1 hit.
[Graphical view]
PROSITEiPS50835. IG_LIKE. 1 hit.
PS51450. LRR. 7 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8C2S7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAWLVLSGIL LCMLGAGLGT SDLEDVLPPA PHNCPDICIC AADVLSCAGR
60 70 80 90 100
GLQDLPVALP TTAAELDLSH NALKRLHPGW LAPLSRLRAL HLGYNKLEVL
110 120 130 140 150
GHGAFTNASG LRTLDLSSNM LRMLHTHDLD GLEELEKLLL FNNSLMHLDL
160 170 180 190 200
DAFQGLRMLS HLYLSCNELS SFSFNHLHGL GLTRLRTLDL SSNWLKHISI
210 220 230 240 250
PELAALPTYL KNRLYLHNNP LPCDCSLYHL LRRWHQRGLS ALHDFEREYT
260 270 280 290 300
CLVFKVSESR VRFFEHSRVF KNCSVAAAPG LELPEEQLHA QVGQSLRLFC
310 320 330 340 350
NTSVPATRVA WVSPKNELLV APASQDGSIA VLADGSLAIG RVQEQHAGVF
360 370 380 390 400
VCLASGPRLH HNQTLEYNVS VQKARPEPET FNTGFTTLLG CIVGLVLVLL
410 420 430 440 450
YLFAPPCRGC CHCCQRACRN RCWPRASSPL QELSAQSSML STTPPDAPSR
460 470 480 490 500
KASVHKHVVF LEPGKKGLNG RVQLAVAEDF DLCNPMGLQL KAGSESASST

GSEGLVMS
Length:508
Mass (Da):55,625
Last modified:February 28, 2003 - v1
Checksum:i31334E42F91810C5
GO

Sequence cautioni

The sequence BAC26035.1 differs from that shown. Reason: Frameshift at position 224. Curated
The sequence BAC98266.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY237004 mRNA. Translation: AAO48945.1.
AB167510 mRNA. Translation: BAD12542.1.
AK028619 mRNA. Translation: BAC26035.1. Frameshift.
AK088051 mRNA. Translation: BAC40120.1.
AK129456 mRNA. Translation: BAC98266.1. Different initiation.
CCDSiCCDS23516.1.
RefSeqiNP_796249.1. NM_177275.4.
UniGeneiMm.449806.

Genome annotation databases

EnsembliENSMUST00000085060; ENSMUSP00000082137; ENSMUSG00000032593.
GeneIDi320844.
KEGGimmu:320844.
UCSCiuc009rom.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY237004 mRNA. Translation: AAO48945.1.
AB167510 mRNA. Translation: BAD12542.1.
AK028619 mRNA. Translation: BAC26035.1. Frameshift.
AK088051 mRNA. Translation: BAC40120.1.
AK129456 mRNA. Translation: BAC98266.1. Different initiation.
CCDSiCCDS23516.1.
RefSeqiNP_796249.1. NM_177275.4.
UniGeneiMm.449806.

3D structure databases

ProteinModelPortaliQ8C2S7.
SMRiQ8C2S7. Positions 33-369.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000082137.

PTM databases

PhosphoSiteiQ8C2S7.

Proteomic databases

PRIDEiQ8C2S7.

Protocols and materials databases

DNASUi320844.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000085060; ENSMUSP00000082137; ENSMUSG00000032593.
GeneIDi320844.
KEGGimmu:320844.
UCSCiuc009rom.1. mouse.

Organism-specific databases

CTDi386724.
MGIiMGI:2444854. Amigo3.
RougeiSearch...

Phylogenomic databases

eggNOGiNOG146733.
GeneTreeiENSGT00530000063545.
HOGENOMiHOG000231327.
HOVERGENiHBG080231.
InParanoidiQ8C2S7.
OMAiVCLATGP.
OrthoDBiEOG7C8GHP.
PhylomeDBiQ8C2S7.
TreeFamiTF326838.

Miscellaneous databases

NextBioi397545.
PROiQ8C2S7.
SOURCEiSearch...

Gene expression databases

BgeeiQ8C2S7.
CleanExiMM_AMIGO3.
GenevestigatoriQ8C2S7.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR000372. LRR-contain_N.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF13855. LRR_8. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 1 hit.
SM00369. LRR_TYP. 1 hit.
SM00013. LRRNT. 1 hit.
[Graphical view]
PROSITEiPS50835. IG_LIKE. 1 hit.
PS51450. LRR. 7 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "AMIGO, a transmembrane protein implicated in axon tract development, defines a novel protein family with leucine-rich repeats."
    Kuja-Panula J., Kiiltomaeki M., Yamashiro T., Rouhiainen A., Rauvala H.
    J. Cell Biol. 160:963-973(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], SUBUNIT, TISSUE SPECIFICITY.
    Strain: C57BL/6Imported.
    Tissue: Cerebellum1 Publication.
  2. Ono T.
    Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: BrainImported.
  3. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NOD.
    Tissue: Skin and Thymus.
  4. "Prediction of the coding sequences of mouse homologues of KIAA gene: III. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries."
    Okazaki N., Kikuno R., Ohara R., Inamoto S., Koseki H., Hiraoka S., Saga Y., Nagase T., Ohara O., Koga H.
    DNA Res. 10:167-180(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Embryonic tailImported.

Entry informationi

Entry nameiAMGO3_MOUSE
AccessioniPrimary (citable) accession number: Q8C2S7
Secondary accession number(s): Q6ZPH1, Q8CEB3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2005
Last sequence update: February 28, 2003
Last modified: February 3, 2015
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.