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Protein

VPS9 domain-containing protein 1

Gene

Vps9d1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
VPS9 domain-containing protein 1
Alternative name(s):
5-day ovary-specific transcript 1 protein
Gene namesi
Name:Vps9d1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 8

Organism-specific databases

MGIiMGI:1914143 Vps9d1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000792801 – 649VPS9 domain-containing protein 1Add BLAST649

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei116PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ8C190
PRIDEiQ8C190

PTM databases

iPTMnetiQ8C190
PhosphoSitePlusiQ8C190

Expressioni

Gene expression databases

BgeeiENSMUSG00000001062
CleanExiMM_1300018I17RIK
ExpressionAtlasiQ8C190 baseline and differential
GenevisibleiQ8C190 MM

Interactioni

Protein-protein interaction databases

BioGridi215310, 1 interactor
STRINGi10090.ENSMUSP00000113575

Structurei

3D structure databases

ProteinModelPortaliQ8C190
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini487 – 648VPS9PROSITE-ProRule annotationAdd BLAST162

Phylogenomic databases

eggNOGiENOG410IT2G Eukaryota
ENOG410YGIS LUCA
GeneTreeiENSGT00390000015057
HOGENOMiHOG000293285
HOVERGENiHBG062847
InParanoidiQ8C190
PhylomeDBiQ8C190
TreeFamiTF332037

Family and domain databases

Gene3Di1.20.1050.80, 1 hit
InterProiView protein in InterPro
IPR036181 MIT_dom_sf
IPR003123 VPS9
IPR037191 VPS9_dom_sf
PfamiView protein in Pfam
PF02204 VPS9, 1 hit
SMARTiView protein in SMART
SM00167 VPS9, 1 hit
SUPFAMiSSF109993 SSF109993, 1 hit
SSF116846 SSF116846, 1 hit
PROSITEiView protein in PROSITE
PS51205 VPS9, 1 hit

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8C190-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAAAAGDGGA KPLQSAMKLA NKAIELDTGN RPREAYVEYL RSIHYISQVL
60 70 80 90 100
LEDVENTTEA GETVPPETSK MLKLAEQCLE RAQSTATKLG RICLKPAVPA
110 120 130 140 150
APPTPLPTSR HRRVCSDEGG KLSPFLPPEI FQKLQVAESQ NSKKELTPLE
160 170 180 190 200
KASLQNQKLR ATYEARMARL DPSQAMQKTS LTLSLQRQMM ENLVIAKARE
210 220 230 240 250
ETLQRKMEER RLRLQEAANR RFCSQVALTP EEREQRALYA AILEYEQDHD
260 270 280 290 300
WPKHWRAKLK RSPGDLSLVT SLLSHLLSLP DHPISQLLKK LQCAVYSALY
310 320 330 340 350
PIVSRAATSA APAPGSCSLP PEANGLLAPG SRRLRSSQSL YCMLSPSEPS
360 370 380 390 400
AAPRVLDGPP PTPSVPTLHS GPLDREADGS PAGPSSPLVD ALSHLPDKDS
410 420 430 440 450
SFEDLEQFLA MSEPQTPGAK REPLLECLKS TVKDIHNAID RLLSLTLLAF
460 470 480 490 500
ESLNTATSKD RCLACIEEPF FSPLWPLLLA LYRSVHRTRE AAVSRSMELY
510 520 530 540 550
RNAPPTALGI PTKLLPRVPE AQASTYPYCT AAQELGLLVL ESCPQKKLEC
560 570 580 590 600
IVRTLRVICI CAEDYCRAQE ARPEGESQPP AAAIGADDLL PILSFVVLRS
610 620 630 640
GLPQLVSECA ALEEFTHEGY LIGEEGYCLT SLQSALSYVE LLSRGRLDK
Length:649
Mass (Da):71,284
Last modified:March 1, 2003 - v1
Checksum:i34385AD36C050552
GO
Isoform 2 (identifier: Q8C190-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     552-555: VRTL → GAGI
     556-649: Missing.

Show »
Length:555
Mass (Da):60,914
Checksum:i3D78A45279606553
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_014703552 – 555VRTL → GAGI in isoform 2. 1 Publication4
Alternative sequenceiVSP_014704556 – 649Missing in isoform 2. 1 PublicationAdd BLAST94

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY751521 mRNA Translation: AAV30827.1
AK028751 mRNA Translation: BAC26098.1
BC057621 mRNA Translation: AAH57621.1
CCDSiCCDS52698.1 [Q8C190-1]
RefSeqiNP_001297590.1, NM_001310661.1
NP_082476.1, NM_028200.2 [Q8C190-1]
UniGeneiMm.276193

Genome annotation databases

EnsembliENSMUST00000117643; ENSMUSP00000113748; ENSMUSG00000001062 [Q8C190-2]
ENSMUST00000122363; ENSMUSP00000113575; ENSMUSG00000001062 [Q8C190-1]
GeneIDi72325
KEGGimmu:72325
UCSCiuc009nuv.2 mouse [Q8C190-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiVP9D1_MOUSE
AccessioniPrimary (citable) accession number: Q8C190
Secondary accession number(s): Q6PFD1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: March 1, 2003
Last modified: March 28, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health