Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q8C190

- VP9D1_MOUSE

UniProt

Q8C190 - VP9D1_MOUSE

Protein

VPS9 domain-containing protein 1

Gene

Vps9d1

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (01 Mar 2003)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    VPS9 domain-containing protein 1
    Alternative name(s):
    5-day ovary-specific transcript 1 protein
    Gene namesi
    Name:Vps9d1
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 8

    Organism-specific databases

    MGIiMGI:1914143. Vps9d1.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. nucleus Source: Ensembl

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 649649VPS9 domain-containing protein 1PRO_0000079280Add
    BLAST

    Proteomic databases

    PaxDbiQ8C190.
    PRIDEiQ8C190.

    PTM databases

    PhosphoSiteiQ8C190.

    Expressioni

    Gene expression databases

    ArrayExpressiQ8C190.
    BgeeiQ8C190.
    CleanExiMM_1300018I17RIK.
    GenevestigatoriQ8C190.

    Interactioni

    Protein-protein interaction databases

    BioGridi215310. 1 interaction.
    STRINGi10090.ENSMUSP00000113748.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8C190.
    SMRiQ8C190. Positions 531-639.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini487 – 648162VPS9PROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 VPS9 domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiNOG70432.
    GeneTreeiENSGT00390000015057.
    HOGENOMiHOG000293285.
    HOVERGENiHBG062847.
    OrthoDBiEOG7P2XV3.
    PhylomeDBiQ8C190.
    TreeFamiTF332037.

    Family and domain databases

    Gene3Di1.20.58.280. 1 hit.
    InterProiIPR007330. MIT.
    IPR003123. VPS9.
    [Graphical view]
    PfamiPF02204. VPS9. 1 hit.
    [Graphical view]
    SUPFAMiSSF116846. SSF116846. 1 hit.
    PROSITEiPS51205. VPS9. 1 hit.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q8C190-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MAAAAGDGGA KPLQSAMKLA NKAIELDTGN RPREAYVEYL RSIHYISQVL    50
    LEDVENTTEA GETVPPETSK MLKLAEQCLE RAQSTATKLG RICLKPAVPA 100
    APPTPLPTSR HRRVCSDEGG KLSPFLPPEI FQKLQVAESQ NSKKELTPLE 150
    KASLQNQKLR ATYEARMARL DPSQAMQKTS LTLSLQRQMM ENLVIAKARE 200
    ETLQRKMEER RLRLQEAANR RFCSQVALTP EEREQRALYA AILEYEQDHD 250
    WPKHWRAKLK RSPGDLSLVT SLLSHLLSLP DHPISQLLKK LQCAVYSALY 300
    PIVSRAATSA APAPGSCSLP PEANGLLAPG SRRLRSSQSL YCMLSPSEPS 350
    AAPRVLDGPP PTPSVPTLHS GPLDREADGS PAGPSSPLVD ALSHLPDKDS 400
    SFEDLEQFLA MSEPQTPGAK REPLLECLKS TVKDIHNAID RLLSLTLLAF 450
    ESLNTATSKD RCLACIEEPF FSPLWPLLLA LYRSVHRTRE AAVSRSMELY 500
    RNAPPTALGI PTKLLPRVPE AQASTYPYCT AAQELGLLVL ESCPQKKLEC 550
    IVRTLRVICI CAEDYCRAQE ARPEGESQPP AAAIGADDLL PILSFVVLRS 600
    GLPQLVSECA ALEEFTHEGY LIGEEGYCLT SLQSALSYVE LLSRGRLDK 649
    Length:649
    Mass (Da):71,284
    Last modified:March 1, 2003 - v1
    Checksum:i34385AD36C050552
    GO
    Isoform 2 (identifier: Q8C190-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         552-555: VRTL → GAGI
         556-649: Missing.

    Show »
    Length:555
    Mass (Da):60,914
    Checksum:i3D78A45279606553
    GO

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei552 – 5554VRTL → GAGI in isoform 2. 1 PublicationVSP_014703
    Alternative sequencei556 – 64994Missing in isoform 2. 1 PublicationVSP_014704Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY751521 mRNA. Translation: AAV30827.1.
    AK028751 mRNA. Translation: BAC26098.1.
    BC057621 mRNA. Translation: AAH57621.1.
    CCDSiCCDS52698.1. [Q8C190-1]
    RefSeqiNP_082476.1. NM_028200.1. [Q8C190-1]
    UniGeneiMm.276193.

    Genome annotation databases

    EnsembliENSMUST00000122363; ENSMUSP00000113575; ENSMUSG00000001062. [Q8C190-1]
    GeneIDi72325.
    KEGGimmu:72325.
    UCSCiuc009nuv.2. mouse. [Q8C190-1]

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY751521 mRNA. Translation: AAV30827.1 .
    AK028751 mRNA. Translation: BAC26098.1 .
    BC057621 mRNA. Translation: AAH57621.1 .
    CCDSi CCDS52698.1. [Q8C190-1 ]
    RefSeqi NP_082476.1. NM_028200.1. [Q8C190-1 ]
    UniGenei Mm.276193.

    3D structure databases

    ProteinModelPortali Q8C190.
    SMRi Q8C190. Positions 531-639.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 215310. 1 interaction.
    STRINGi 10090.ENSMUSP00000113748.

    PTM databases

    PhosphoSitei Q8C190.

    Proteomic databases

    PaxDbi Q8C190.
    PRIDEi Q8C190.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000122363 ; ENSMUSP00000113575 ; ENSMUSG00000001062 . [Q8C190-1 ]
    GeneIDi 72325.
    KEGGi mmu:72325.
    UCSCi uc009nuv.2. mouse. [Q8C190-1 ]

    Organism-specific databases

    CTDi 9605.
    MGIi MGI:1914143. Vps9d1.

    Phylogenomic databases

    eggNOGi NOG70432.
    GeneTreei ENSGT00390000015057.
    HOGENOMi HOG000293285.
    HOVERGENi HBG062847.
    OrthoDBi EOG7P2XV3.
    PhylomeDBi Q8C190.
    TreeFami TF332037.

    Miscellaneous databases

    NextBioi 336024.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q8C190.
    Bgeei Q8C190.
    CleanExi MM_1300018I17RIK.
    Genevestigatori Q8C190.

    Family and domain databases

    Gene3Di 1.20.58.280. 1 hit.
    InterProi IPR007330. MIT.
    IPR003123. VPS9.
    [Graphical view ]
    Pfami PF02204. VPS9. 1 hit.
    [Graphical view ]
    SUPFAMi SSF116846. SSF116846. 1 hit.
    PROSITEi PS51205. VPS9. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Identification of differentially expressed transcripts between 1 day ovary and 5 day ovary."
      Park C.E., Hwang K.C., Kim N.H., Lee K.A.
      Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
      Strain: ICR.
      Tissue: Ovary.
    2. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
      Strain: C57BL/6J.
      Tissue: Skin.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
      Strain: C57BL/6.
      Tissue: Embryonic brain.

    Entry informationi

    Entry nameiVP9D1_MOUSE
    AccessioniPrimary (citable) accession number: Q8C190
    Secondary accession number(s): Q6PFD1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2005
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3