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Q8C089 (Q8C089_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified November 16, 2011. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative uncharacterized protein EMBL BAC27649.1
Gene names
Name:Extl2 MGI 1889574
OrganismMus musculus (Mouse) EMBL BAC27649.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length274 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAC27649.1

Sequences

Sequence LengthMass (Da)Tools
Q8C089 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: BA4A74FE3460B8AE

FASTA27431,096
        10         20         30         40         50         60 
KSPSKSALDS FTLIMQTYNR TDLLLRLLNH YQAVPSLHKV IVVWNNVGEK GPEELWNSLG 

        70         80         90        100        110        120 
PHPIPVIFKP QTANKMRNRL QVFPEVETNA VLMVDDDTLI SAQDLVFAFS IWQQFPDQII 

       130        140        150        160        170        180 
GFVLRKHVST SSGIYSYGGF ELQTPGPGNG DQYSMVLIGA SFFNSKYLEL FQKQPAAVHA 

       190        200        210        220        230        240 
LIDETQNCDD IAMNFLVTRH TGKPSGIFVK PINMVNLEKE TNGYSGMWHR AEHFLQRSYC 

       250        260        270 
INKLVNIYDG MPLKYSNIMI SQFGFPYANH KSKM

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed: 10349636] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27649.1.
Tissue: Medulla oblongata EMBL BAC27649.1.
[2]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed: 16141073] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27649.1.
Tissue: Medulla oblongata EMBL BAC27649.1.
[3]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27649.1.
Tissue: Medulla oblongata EMBL BAC27649.1.
[4]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27649.1.
Tissue: Medulla oblongata EMBL BAC27649.1.
[5]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27649.1.
Tissue: Medulla oblongata EMBL BAC27649.1.
[6]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed: 11042159] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27649.1.
Tissue: Medulla oblongata EMBL BAC27649.1.
[7]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed: 11076861] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27649.1.
Tissue: Medulla oblongata EMBL BAC27649.1.
[8]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC27649.1.
Tissue: Medulla oblongata EMBL BAC27649.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK032016 mRNA. Translation: BAC27649.1.
IPIIPI00831562.
RefSeqNP_001156986.1. NM_001163514.1.
NP_001156987.1. NM_001163515.1.
NP_067363.3. NM_021388.4.
UniGeneMm.41739.

3D structure databases

HSSPHSSP built from PDB template 1ON8 based on UniProtKB Q9ES89.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ8C089.

Protein family/group databases

CAZyGT64. Glycosyltransferase Family 64.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID58193.
KEGGmmu:58193.

Organism-specific databases

CTD2135.
MGIMGI:1889574. Extl2.

Phylogenomic databases

GeneTreeENSGT00550000074496.
HOVERGENHBG051525.
InParanoidQ8C089.

Gene expression databases

ArrayExpressQ8C089.
GenevestigatorQ8C089.

Family and domain databases

InterProIPR015338. HexNAc_Trfase_a.
[Graphical view]
KOK02369.
PfamPF09258. Glyco_transf_64. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameQ8C089_MOUSE
AccessionPrimary (citable) accession number: Q8C089
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: November 16, 2011
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info