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Q8BZD0

- Q8BZD0_MOUSE

UniProt

Q8BZD0 - Q8BZD0_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Dbx2

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 89 (01 Oct 2014)
      Sequence version 1 (01 Mar 2003)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. sequence-specific DNA binding transcription factor activity Source: InterPro
    2. transcription regulatory region sequence-specific DNA binding Source: InterPro

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:Dbx2Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:107445. Dbx2.

    Subcellular locationi

    Nucleus UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotationSAAS annotation

    PTM / Processingi

    Proteomic databases

    PaxDbiQ8BZD0.

    Expressioni

    Gene expression databases

    BgeeiQ8BZD0.
    GenevestigatoriQ8BZD0.

    Interactioni

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000060424.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8BZD0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains homeobox DNA-binding domain.SAAS annotation

    Keywords - Domaini

    HomeoboxUniRule annotationSAAS annotation

    Phylogenomic databases

    eggNOGiNOG270330.
    HOGENOMiHOG000112172.
    HOVERGENiHBG104467.
    InParanoidiQ8BZD0.
    PhylomeDBiQ8BZD0.

    Family and domain databases

    Gene3Di1.10.10.60. 1 hit.
    InterProiIPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR020479. Homeobox_metazoa.
    IPR009057. Homeodomain-like.
    IPR000047. HTH_motif.
    [Graphical view]
    PfamiPF00046. Homeobox. 1 hit.
    [Graphical view]
    PRINTSiPR00024. HOMEOBOX.
    PR00031. HTHREPRESSR.
    SMARTiSM00389. HOX. 1 hit.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 1 hit.
    PROSITEiPS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q8BZD0-1 [UniParc]FASTAAdd to Basket

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    LPASPVPLKL CPAGPFGVRW AFQMPPGRAP GERDSAFQPS APVPSKPFLL    50
    SAPPFYSACC GGSCRRPASP TAFSREEHGL PLLTQDSNSK ARRGILRRAV 100
    FSEEQRKALE KMFQKQKYIS KTDRRKLAVS LGLKESQVKI WFQNRRMKWR 150
    NSKEKEVLSS RCLQEVSLQE DRLARPAVGC PPQCPSIWEV SQPHSSPSWR 200
    EETPESAERL TQENSGVLEA DSLRGTLYLC PEKGPRDKHG LQSTI 245
    Length:245
    Mass (Da):27,438
    Last modified:March 1, 2003 - v1
    Checksum:i7B212B2FA7BBE0FC
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK035803 mRNA. Translation: BAC29191.1.
    RefSeqiNP_997416.2. NM_207533.2.
    UniGeneiMm.152937.

    Genome annotation databases

    GeneIDi223843.
    KEGGimmu:223843.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK035803 mRNA. Translation: BAC29191.1 .
    RefSeqi NP_997416.2. NM_207533.2.
    UniGenei Mm.152937.

    3D structure databases

    ProteinModelPortali Q8BZD0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000060424.

    Proteomic databases

    PaxDbi Q8BZD0.

    Protocols and materials databases

    DNASUi 223843.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 223843.
    KEGGi mmu:223843.

    Organism-specific databases

    CTDi 440097.
    MGIi MGI:107445. Dbx2.

    Phylogenomic databases

    eggNOGi NOG270330.
    HOGENOMi HOG000112172.
    HOVERGENi HBG104467.
    InParanoidi Q8BZD0.
    PhylomeDBi Q8BZD0.

    Miscellaneous databases

    NextBioi 376933.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q8BZD0.
    Genevestigatori Q8BZD0.

    Family and domain databases

    Gene3Di 1.10.10.60. 1 hit.
    InterProi IPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR020479. Homeobox_metazoa.
    IPR009057. Homeodomain-like.
    IPR000047. HTH_motif.
    [Graphical view ]
    Pfami PF00046. Homeobox. 1 hit.
    [Graphical view ]
    PRINTSi PR00024. HOMEOBOX.
    PR00031. HTHREPRESSR.
    SMARTi SM00389. HOX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 1 hit.
    PROSITEi PS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CerebellumImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CerebellumImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CerebellumImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CerebellumImported.
    5. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CerebellumImported.
    6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CerebellumImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CerebellumImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CerebellumImported.

    Entry informationi

    Entry nameiQ8BZD0_MOUSE
    AccessioniPrimary (citable) accession number: Q8BZD0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 1, 2003
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 89 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)