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Protein
Submitted name:

Putative uncharacterized protein

Gene

Trp53bp1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Trp53bp1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1351320. Trp53bp1.

PTM / Processingi

Proteomic databases

PaxDbiQ8BZ87.
PeptideAtlasiQ8BZ87.

Expressioni

Gene expression databases

GenevisibleiQ8BZ87. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000106278.

Structurei

3D structure databases

ProteinModelPortaliQ8BZ87.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini421 – 48969BRCTInterPro annotationAdd
BLAST
Domaini505 – 605101BRCTInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG3548. Eukaryota.
ENOG411075K. LUCA.
HOVERGENiHBG101928.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR015125. 53-BP1_Tudor.
IPR001357. BRCT_dom.
IPR014722. Rib_L2_dom2.
[Graphical view]
PfamiPF09038. 53-BP1_Tudor. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q8BZ87-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
KLSPRKGISQ TGAPVCEEDG DAGLGIRQGG KAPVTPRGRG RRGRPPSRTT
60 70 80 90 100
GTRETVVSGP LGVEDISPSM SPDDKSFTRI MPRVPDSTKR TDASSSTLRR
110 120 130 140 150
SDSPEIPFQA ATGSSDGLDS SSSGNSFVGL RVVAKWSSNG YFYSGKITRD
160 170 180 190 200
VGAGKYKLLF DDGYECDVLG KDILLCDPIP LDTEVTALSE DEYFSAGVVK
210 220 230 240 250
GHRKESGELY YSIEKEGQRK WYKRMAVILS LEQGNRLREQ YGLGPYEAVT
260 270 280 290 300
PLTKAADISL DNLVEGKRKR RSNISSPVTP TAASSSCTTP TRKATESPRA
310 320 330 340 350
STGVPSGKRK LPTSEEERSP AKRGRKSATV KPGTVGAAEF VSPCETGDNI
360 370 380 390 400
GEPSVLEEPR GPLPLNKTLF LGYAFLLTMA TTSDKLASRS KLLDGPTGSS
410 420 430 440 450
EEEEEFLEIP PFNKQYTECQ LRAGAGYILE DFNEAQCNTA YQCLLIADQH
460 470 480 490 500
CRTRKYFLCL ASGIPCVSHV WVHDSCHANQ LQNYRNYLLP AGYSLEEQRI
510 520 530 540 550
LDWQPRENPF QNLKVLLVSD QQQNFLELWS EILMTGGAAS VKQHHSSAHN
560 570 580 590 600
KDIALGVFDV VVTDPSCPAS VLKCAEALQL PVVSQEWVIQ CLIVGERIGF
610
KQHPKYKHDY VSH
Length:613
Mass (Da):67,135
Last modified:March 1, 2003 - v1
Checksum:i7B551AC25F27F80A
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK036324 mRNA. Translation: BAC29383.1.
RefSeqiNP_001277759.1. NM_001290830.1.
NP_038763.3. NM_013735.4.
UniGeneiMm.215389.
Mm.383499.
Mm.481841.

Genome annotation databases

GeneIDi27223.
KEGGimmu:27223.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK036324 mRNA. Translation: BAC29383.1.
RefSeqiNP_001277759.1. NM_001290830.1.
NP_038763.3. NM_013735.4.
UniGeneiMm.215389.
Mm.383499.
Mm.481841.

3D structure databases

ProteinModelPortaliQ8BZ87.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000106278.

Proteomic databases

PaxDbiQ8BZ87.
PeptideAtlasiQ8BZ87.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi27223.
KEGGimmu:27223.

Organism-specific databases

CTDi27223.
MGIiMGI:1351320. Trp53bp1.

Phylogenomic databases

eggNOGiKOG3548. Eukaryota.
ENOG411075K. LUCA.
HOVERGENiHBG101928.

Miscellaneous databases

ChiTaRSiTrp53bp1. mouse.
SOURCEiSearch...

Gene expression databases

GenevisibleiQ8BZ87. MM.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR015125. 53-BP1_Tudor.
IPR001357. BRCT_dom.
IPR014722. Rib_L2_dom2.
[Graphical view]
PfamiPF09038. 53-BP1_Tudor. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: CerebellumImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: CerebellumImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: CerebellumImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: CerebellumImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: CerebellumImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: CerebellumImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: CerebellumImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: CerebellumImported.

Entry informationi

Entry nameiQ8BZ87_MOUSE
AccessioniPrimary (citable) accession number: Q8BZ87
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: July 6, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.